calculateEdgeStats: calculateEdgeStats

In EngeLab/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method

Description

Subtitle

Usage

calculateEdgeStats(
  swarm,
  singlets,
  multiplets,
  depleted = FALSE,
  maxCellsPerMultiplet = Inf,
  groups = NULL,
  multiplet.factor = NA
)

Arguments

swarm	A CIMseqSwarm object.
singlets	A CIMseqSinglets object.
multiplets	A CIMseqMultiplets object.
groups	Groupings, to obtain p-values based on replicates
...	additional arguments to pass on

Details

Description

Value

CIMseqSwarm connection weights and p-values.

Author(s)

Jason T. Serviss

Examples

output <- calculateEdgeStats(
CIMseqSwarm_test, CIMseqSinglets_test, CIMseqMultiplets_test
)

EngeLab/CIMseq documentation built on Jan. 25, 2022, 5 a.m.