getEdgesForMultiplet: getEdgesForMultiplet
In EngeLab/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Returns the names of the edges detected in a multiplet.
Usage
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getEdgesForMultiplet(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
getEdgesForMultiplet(
swarm,
singlets,
multiplets,
multipletName = NULL,
maxCellsPerMultiplet = Inf,
depleted = FALSE,
multiplet.factor = NA
)
Arguments
swarm
A CIMseqSwarm object.
...
additional arguments to pass on
singlets
A CIMseqSinglets object.
multiplets
A CIMseqMultiplets object.
multipletName
character; The name of the multiplet of interest.
Details
Description
Value
Edge names.
Author(s)
Jason T. Serviss
Martin Enge
Examples
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output <- getEdgesForMultiplet(
CIMseqSwarm_test, CIMseqSinglets_test, CIMseqMultiplets_test,
"m.NJB00204.G04"
)
EngeLab/CIMseq documentation built on Jan. 25, 2022, 5 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Returns the names of the edges detected in a multiplet.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 | getEdgesForMultiplet(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
getEdgesForMultiplet(
swarm,
singlets,
multiplets,
multipletName = NULL,
maxCellsPerMultiplet = Inf,
depleted = FALSE,
multiplet.factor = NA
)
|
Arguments
swarm |
A CIMseqSwarm object. |
... |
additional arguments to pass on |
singlets |
A CIMseqSinglets object. |
multiplets |
A CIMseqMultiplets object. |
multipletName |
character; The name of the multiplet of interest. |
Details
Description
Value
Edge names.
Author(s)
Jason T. Serviss
Martin Enge
Examples
1 2 3 4 | output <- getEdgesForMultiplet(
CIMseqSwarm_test, CIMseqSinglets_test, CIMseqMultiplets_test,
"m.NJB00204.G04"
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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