getKNN: getKNN
In EngeLab/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Author(s)
Description
Calculates Euclidean distance in PCA space.
Usage
1
getKNN(pca, pcs, k, mask)
Arguments
pca
Matrix; Principal components as columns, samples as rows.
pcs
Integer; Length 1 vector indicating the max principal component to
retain.
k
Integer; Number of nearest neighbors.
mask
Integer, Principal components to mask.
Author(s)
Jason T. Serviss
EngeLab/CIMseq documentation built on Jan. 25, 2022, 5 a.m.
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Description Usage Arguments Author(s)
Description
Calculates Euclidean distance in PCA space.
Usage
1 | getKNN(pca, pcs, k, mask)
|
Arguments
pca |
Matrix; Principal components as columns, samples as rows. |
pcs |
Integer; Length 1 vector indicating the max principal component to retain. |
k |
Integer; Number of nearest neighbors. |
mask |
Integer, Principal components to mask. |
Author(s)
Jason T. Serviss
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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