singlemoleculer-package: SMoLR package overview

SMOLR-packageR Documentation

SMoLR package overview

Description

Single Molecule Localization in R (SMoLR) is a package for analysis in single-molecule localization microscopy data in R. The pacakage allows to extract spatial organization information from (multiple) single-molecule super-resolution images or ROIs (Region of Interests). Using lists large sets of localization data organized in a list of data.frame's can be applied to the functions of the package.

Details

Package: SMoLR
Type: Package
Version: 1.0.0
Date: 2017-09-07
License: LGPLv3

Package content

Data import:

  • SMOLR_IMPORT

  • SMOLR_LOAD

  • IJROI_subset

Visualization:

  • SMOLR

  • SMOLR_KDE

  • SMOLR_PLOT

Clustering:

  • SMOLR_KDE

  • SMOLR_DBSCAN

Statistic extration:

  • SMOLR_FEATURES

  • SMOLR_POINT_FEATURES

  • SMOLR_TO_PPP

Author(s)

Optical Imaging Center Erasmus MC, Rotterdam

Johan Slotman (j.slotman@erasmusmc.nl) and Maarten Paul (m.w.paul@erasmusmc.nl)

Examples

  vignette("SMoLR")

ErasmusOIC/SMoLR documentation built on Aug. 20, 2024, 8:50 p.m.