singlemoleculer-package: SMoLR package overview

In ErasmusOIC/SMoLR: Single Molecule Localization Microscopy visualization and analysis in R

SMoLR package overview

Description

Single Molecule Localization in R (SMoLR) is a package for analysis in single-molecule localization microscopy data in R. The pacakage allows to extract spatial organization information from (multiple) single-molecule super-resolution images or ROIs (Region of Interests). Using lists large sets of localization data organized in a list of data.frame's can be applied to the functions of the package.

Details

Package:	SMoLR
Type:	Package
Version:	1.0.0
Date:	2017-09-07
License:	LGPLv3

Package content

Data import:

• SMOLR_IMPORT

• SMOLR_LOAD

• IJROI_subset

Visualization:

• SMOLR

• SMOLR_KDE

• SMOLR_PLOT

Clustering:

• SMOLR_KDE

• SMOLR_DBSCAN

Statistic extration:

• SMOLR_FEATURES

• SMOLR_POINT_FEATURES

• SMOLR_TO_PPP

Author(s)

Optical Imaging Center Erasmus MC, Rotterdam

Johan Slotman ([e-mail]) and Maarten Paul ([e-mail])

Examples

  vignette("SMoLR")

ErasmusOIC/SMoLR documentation built on July 27, 2023, 8:05 p.m.