getDataPlatform_GeneSymbol_RnaSeq2: getDataPlatform_GeneSymbol_RnaSeq2

Description Usage Arguments Value Examples

View source: R/getDataPlatform.R

Description

Load an entire platform's data across all diseases and samples. WARNING: This can be very large and slow. Do this only on machines with more than 64GB of free memory.

Usage

1
getDataPlatform_GeneSymbol_RnaSeq2(theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)

Arguments

theZipFile

Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: This is a subdirectory of the main GENE_REPORT directory.

theVerboseFlag

Default: FALSE. TRUE means write all output, which can be very verbose.

Value

A matrix with sample ids as columns and gene symbols as rows. Samples and row ids are in sorted order, not requested order.

Examples

1
#getDataPlatform_GeneSymbol_RnaSeq2()

GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.