getMetadata_GeneByNeighbor_HG19: getMetadata_GeneByNeighbor_HG19
In GeneSurvey/TCGAGeneReport: Access to Gene Report Data

Get the metadata about the gene(s) within a given range.

1	getMetadata_GeneByNeighbor_HG19(theStartPosition, theStopPosition, theChromosome, theStrand, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)

`theStartPosition`	Inclusive position to start search.
`theStopPosition`	Inclusive position to stop search.
`theChromosome`	Chromosome (as string) to search, such as "X", "Y", "1", or "21" - NULL skips.
`theStrand`	Strand as a string "+" or "-" - NULL skips
`theZipFile`	Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT.
`theVerboseFlag`	Default: FALSE. TRUE means write all output, which can be very verbose.

The return value is a list of objects with gene data. The following functions work to pull data out of the object.

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2
3

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.

GeneSurvey/TCGAGeneReport index

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