Description Usage Arguments Value Examples
View source: R/getMetadata_HG.R
Get the metadata about the gene(s) within a given range.
1 | getMetadata_GeneByNeighbor_HG19(theStartPosition, theStopPosition, theChromosome, theStrand, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)
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theStartPosition |
Inclusive position to start search. |
theStopPosition |
Inclusive position to stop search. |
theChromosome |
Chromosome (as string) to search, such as "X", "Y", "1", or "21" - NULL skips. |
theStrand |
Strand as a string "+" or "-" - NULL skips |
theZipFile |
Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT. |
theVerboseFlag |
Default: FALSE. TRUE means write all output, which can be very verbose. |
The return value is a list of objects with gene data. The following functions work to pull data out of the object.
get.GeneSymbol |
get.GeneSymbol |
get.GeneId |
get.GeneId |
get.VersionIndex |
get.VersionIndex |
get.LocationStart |
get.LocationStart |
get.LocationEnd |
get.LocationEnd |
get.Chromosome |
get.Chromosome |
get.Strand |
get.Strand |
1 2 3 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
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