Man pages for GeneSurvey/TCGAGeneReport
Access to Gene Report Data

filterForCommonSamplesfilterForCommonSamples
geneSymbolsForDatasetgeneSymbolsForDataset
geneSymbolsMatchDatasetgeneSymbolsMatchDataset
get.Chromosomeget.Chromosome
getColorsForDiseasesgetColorsForDiseases
getContrastgetContrast
get.Dataget.Data
getDataClinicalgetDataClinical
getData_CombinedHsaMimat_miRNASeqgetData_CombinedHsaMimat_miRNASeq
getData_GeneSymbol_MutationsgetData_GeneSymbol_Mutations
getData_GeneSymbol_RnaSeqgetData_GeneSymbol_RnaSeq
getData_GeneSymbol_RnaSeq2getData_GeneSymbol_RnaSeq2
getData_GeneSymbol_SNP6getData_GeneSymbol_SNP6
getDataMatrix_GeneSymbol_Meth27getDataMatrix_GeneSymbol_Meth27
getDataMatrix_GeneSymbol_Meth450getDataMatrix_GeneSymbol_Meth450
getDataObject_CombinedHsaMimat_miRNASeqgetDataObject_CombinedHsaMimat_miRNASeq
getDataObject_GeneSymbol_Meth27getDataObject_GeneSymbol_Meth27
getDataObject_GeneSymbol_Meth450getDataObject_GeneSymbol_Meth450
getDataObject_GeneSymbol_MutationsgetDataObject_GeneSymbol_Mutations
getDataObject_GeneSymbol_RnaSeqgetDataObject_GeneSymbol_RnaSeq
getDataObject_GeneSymbol_RnaSeq2getDataObject_GeneSymbol_RnaSeq2
getDataObject_GeneSymbol_SNP6getDataObject_GeneSymbol_SNP6
getDataObject_Probe_Meth27getDataObject_Probe_Meth27
getDataObject_Probe_Meth450getDataObject_Probe_Meth450
getDataPlatform_CombinedHsaMimat_miRNASeqgetDataPlatform_CombinedHsaMimat_miRNASeq
getDataPlatform_GeneSymbol_MutationsgetDataPlatform_GeneSymbol_Mutations
getDataPlatform_GeneSymbol_RnaSeqgetDataPlatform_GeneSymbol_RnaSeq
getDataPlatform_GeneSymbol_RnaSeq2getDataPlatform_GeneSymbol_RnaSeq2
getDataPlatform_GeneSymbol_SNP6getDataPlatform_GeneSymbol_SNP6
getDataPlatform_Probe_Meth27getDataPlatform_Probe_Meth27
getDataPlatform_Probe_Meth450getDataPlatform_Probe_Meth450
getData_Probe_Meth27getData_Probe_Meth27
getData_Probe_Meth450getData_Probe_Meth450
getDataVersiongetDataVersion
get.DerivedFromget.DerivedFrom
get.GeneIdget.GeneId
get.GeneStructureget.GeneStructure
get.GeneSymbolget.GeneSymbol
get.GenomeAnnotationsget.GenomeAnnotations
getImputedNAs_CombinedHsaMimat_miRNASeqgetImputedNAs_CombinedHsaMimat_miRNASeq
getImputedNAs_GeneSymbol_RnaSeqgetImputedNAs_GeneSymbol_RnaSeq
getImputedNAs_GeneSymbol_RnaSeq2getImputedNAs_GeneSymbol_RnaSeq2
getImputedNAs_GeneSymbol_SNP6getImputedNAs_GeneSymbol_SNP6
getImputedNAs_Probe_Meth27getImputedNAs_Probe_Meth27
getImputedNAs_Probe_Meth450getImputedNAs_Probe_Meth450
get.LocationEndget.LocationEnd
get.LocationStartget.LocationStart
getMetadata_GeneByNeighbor_HG18getMetadata_GeneByNeighbor_HG18
getMetadata_GeneByNeighbor_HG19getMetadata_GeneByNeighbor_HG19
getMetadata_GeneByNeighbor_RnaSeqgetMetadata_GeneByNeighbor_RnaSeq
getMetadata_GeneByNeighbor_RnaSeq2getMetadata_GeneByNeighbor_RnaSeq
getMetadata_Gene_HG18getMetadata_Gene_HG18
getMetadata_Gene_HG19getMetadata_Gene_HG19
getMetadata_Gene_MutationsgetMetadata_Gene_Mutations
getMetadata_Gene_RnaSeqgetMetadata_Gene_RnaSeq
getMetadata_Gene_RnaSeq2getMetadata_Gene_RnaSeq2
getMetadataPop_BarcodeDiseasegetMetadataPop_BarcodeDisease
getMetadataPop_BarcodeSamplecodegetMetadataPop_BarcodeSamplecode
getMetadataPop_PatientDiseasegetMetadataPop_PatientDisease
getMetadata_ProbeByNeighbor_Meth27getMetadata_ProbeByNeighbor_Meth27
getMetadata_ProbeByNeighbor_Meth450getMetadata_ProbeByNeighbor_Meth450
getMetadata_Probe_Meth27getMetadata_Probe_Meth27
getMetadata_Probe_Meth450getMetadata_Probe_Meth450
get.MimatIdget.MimatId
get.MirIdget.MirId
getMirs_List_MimatgetMirs_List_Mimat
getMirs_List_MirgetMirs_List_Mir
getMirs_Metadata_MimatgetMirs_Metadata_Mimat
getMirs_Metadata_MirgetMirs_Metadata_Mir
get.MirTypeget.MirType
get.Nameget.Name
getNames_CombinedHsaMimat_miRNASeqgetNames_CombinedHsaMimat_miRNASeq
getNames_GeneSymbol_Meth27getNames_GeneSymbol_Meth27
getNames_GeneSymbol_Meth450getNames_GeneSymbol_Meth450
getNames_GeneSymbol_MutationsgetNames_GeneSymbol_Mutations
getNames_GeneSymbol_RnaSeqgetNames_GeneSymbol_RnaSeq
getNames_GeneSymbol_RnaSeq2getNames_GeneSymbol_RnaSeq2
getNames_GeneSymbol_SNP6getNames_GeneSymbol_SNP6
getNames_ProbeFromGeneSymbol_Meth27getNames_ProbeFromGeneSymbol_Meth27
getNames_ProbeFromGeneSymbol_Meth450getNames_ProbeFromGeneSymbol_Meth450
getNames_Probe_Meth27getNames_Probe_Meth27
getNames_Probe_Meth450getNames_Probe_Meth450
getOneToOne_GeneSymbol_ListgetOneToOne_GeneSymbol_List
getOneToOne_GeneSymbol_UCIDgetOneToOne_GeneSymbol_UCID
getOneToOne_UCID_GeneSymbolgetOneToOne_UCID_GeneSymbol
getOneToOne_UCSC_ListgetOneToOne_UCSC_List
get.ProbeLocationget.ProbeLocation
get.SampleAnnotationsget.SampleAnnotations
get.Strandget.Strand
getSynonymsgetSynonyms
get.TissueAnnotationsget.TissueAnnotations
get.VersionIndexget.VersionIndex
initGeneReportinitGeneReport
loadDataObjectloadDataObject
plotAssaysplotAssays
plot_CombinedHsaMimat_miRNASeqplot_CombinedHsaMimat_miRNASeq
plotGenericOutputplotGenericOutput
plot_GeneSymbol_Meth27plot_GeneSymbol_Meth27
plot_GeneSymbol_Meth450plot_GeneSymbol_Meth450
plot_GeneSymbol_Mutationsplot_GeneSymbol_Mutations
plot_GeneSymbol_RnaSeqplot_GeneSymbol_RnaSeq
plot_GeneSymbol_RnaSeq2plot_GeneSymbol_RnaSeq2
plot_GeneSymbol_SNP6plot_GeneSymbol_SNP6
plotHeatmapOutputplotHeatmapOutput
plot_Probe_Meth27plot_Probe_Meth27
plot_Probe_Meth450plot_Probe_Meth450
GeneSurvey/TCGAGeneReport documentation built on May 8, 2017, noon