getMirs_Metadata_Mir: getMirs_Metadata_Mir

Description Usage Arguments Value

View source: R/getMirs.R

Description

Give a mir id, get the list of metadata mirs that match that id

Usage

1
getMirs_Metadata_Mir(theMirId, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)

Arguments

theMirId

A mir id–one of the strings from getMirs_List_Mir

theZipFile

Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT.

theVerboseFlag

Default: FALSE. TRUE means write all output, which can be very verbose.

Value

Return a list of Metadata_Mir objects. The following functions work to pull data out of the object.

get.MirId

get.MirId

get.MimatId

get.MimatId

get.MirType

get.MirType

get.Chromosome

get.Chromosome

get.ProbeLocation

get.ProbeLocation

get.Strand

get.Strand

get.GeneStructure

get.GeneStructure

get.DerivedFrom

get.DerivedFrom


GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.