Files in GeneSurvey/TCGAGeneReport
Access to Gene Report Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/GSColors.R
R/TCGAGeneReport.R
R/filterForCommonSamples.R
R/getContrast.R
R/getData.R
R/getDataClinical.R
R/getDataObject.R
R/getDataPlatform.R
R/getDelta.R
R/getImputedNAs.R
R/getMetadataPop.R
R/getMetadataTcga_Name.R
R/getMetadata_Gene.R
R/getMetadata_HG.R
R/getMetadata_Probe.R
R/getMirs.R
R/getNames.R
R/getNames_ProbeFromGeneSymbol.R
R/getOneToOne.R
R/plot.R
R/plotAssays.R
R/plotGeneric.R
R/plotHeatmap.R
R/zzz.R
README.md
TCGAGeneReport.Rproj
inst/TcgaGSData/TcgaGSData.jar
inst/TcgaGSData/TcgaIdConverter.jar
inst/TcgaGSData/commons-codec-1.9.jar
inst/TcgaGSData/commons-compress-1.7.jar
inst/TcgaGSData/commons-io-2.4.jar
inst/TcgaGSData/commons-net-3.3.jar
man/filterForCommonSamples.Rd
man/geneSymbolsForDataset.Rd
man/geneSymbolsMatchDataset.Rd
man/get.Chromosome.Rd
man/get.Data.Rd
man/get.DerivedFrom.Rd
man/get.GeneId.Rd
man/get.GeneStructure.Rd
man/get.GeneSymbol.Rd
man/get.GenomeAnnotations.Rd
man/get.LocationEnd.Rd
man/get.LocationStart.Rd
man/get.MimatId.Rd
man/get.MirId.Rd
man/get.MirType.Rd
man/get.Name.Rd
man/get.ProbeLocation.Rd
man/get.SampleAnnotations.Rd
man/get.Strand.Rd
man/get.TissueAnnotations.Rd
man/get.VersionIndex.Rd
man/getColorsForDiseases.Rd
man/getContrast.Rd
man/getDataClinical.Rd
man/getDataMatrix_GeneSymbol_Meth27.Rd
man/getDataMatrix_GeneSymbol_Meth450.Rd
man/getDataObject_CombinedHsaMimat_miRNASeq.Rd
man/getDataObject_GeneSymbol_Meth27.Rd
man/getDataObject_GeneSymbol_Meth450.Rd
man/getDataObject_GeneSymbol_Mutations.Rd
man/getDataObject_GeneSymbol_RnaSeq.Rd
man/getDataObject_GeneSymbol_RnaSeq2.Rd
man/getDataObject_GeneSymbol_SNP6.Rd
man/getDataObject_Probe_Meth27.Rd
man/getDataObject_Probe_Meth450.Rd
man/getDataPlatform_CombinedHsaMimat_miRNASeq.Rd
man/getDataPlatform_GeneSymbol_Mutations.Rd
man/getDataPlatform_GeneSymbol_RnaSeq.Rd
man/getDataPlatform_GeneSymbol_RnaSeq2.Rd
man/getDataPlatform_GeneSymbol_SNP6.Rd
man/getDataPlatform_Probe_Meth27.Rd
man/getDataPlatform_Probe_Meth450.Rd
man/getDataVersion.Rd
man/getData_CombinedHsaMimat_miRNASeq.Rd
man/getData_GeneSymbol_Mutations.Rd
man/getData_GeneSymbol_RnaSeq.Rd
man/getData_GeneSymbol_RnaSeq2.Rd
man/getData_GeneSymbol_SNP6.Rd
man/getData_Probe_Meth27.Rd
man/getData_Probe_Meth450.Rd
man/getImputedNAs_CombinedHsaMimat_miRNASeq.Rd
man/getImputedNAs_GeneSymbol_RnaSeq.Rd
man/getImputedNAs_GeneSymbol_RnaSeq2.Rd
man/getImputedNAs_GeneSymbol_SNP6.Rd
man/getImputedNAs_Probe_Meth27.Rd
man/getImputedNAs_Probe_Meth450.Rd
man/getMetadataPop_BarcodeDisease.Rd
man/getMetadataPop_BarcodeSamplecode.Rd
man/getMetadataPop_PatientDisease.Rd
man/getMetadata_GeneByNeighbor_HG18.Rd
man/getMetadata_GeneByNeighbor_HG19.Rd
man/getMetadata_GeneByNeighbor_RnaSeq.Rd
man/getMetadata_GeneByNeighbor_RnaSeq2.Rd
man/getMetadata_Gene_HG18.Rd
man/getMetadata_Gene_HG19.Rd
man/getMetadata_Gene_Mutations.Rd
man/getMetadata_Gene_RnaSeq.Rd
man/getMetadata_Gene_RnaSeq2.Rd
man/getMetadata_ProbeByNeighbor_Meth27.Rd
man/getMetadata_ProbeByNeighbor_Meth450.Rd
man/getMetadata_Probe_Meth27.Rd
man/getMetadata_Probe_Meth450.Rd
man/getMirs_List_Mimat.Rd
man/getMirs_List_Mir.Rd
man/getMirs_Metadata_Mimat.Rd
man/getMirs_Metadata_Mir.Rd
man/getNames_CombinedHsaMimat_miRNASeq.Rd
man/getNames_GeneSymbol_Meth27.Rd
man/getNames_GeneSymbol_Meth450.Rd
man/getNames_GeneSymbol_Mutations.Rd
man/getNames_GeneSymbol_RnaSeq.Rd
man/getNames_GeneSymbol_RnaSeq2.Rd
man/getNames_GeneSymbol_SNP6.Rd
man/getNames_ProbeFromGeneSymbol_Meth27.Rd
man/getNames_ProbeFromGeneSymbol_Meth450.Rd
man/getNames_Probe_Meth27.Rd
man/getNames_Probe_Meth450.Rd
man/getOneToOne_GeneSymbol_List.Rd
man/getOneToOne_GeneSymbol_UCID.Rd
man/getOneToOne_UCID_GeneSymbol.Rd
man/getOneToOne_UCSC_List.Rd
man/getSynonyms.Rd
man/initGeneReport.Rd
man/loadDataObject.Rd
man/plotAssays.Rd
man/plotGenericOutput.Rd
man/plotHeatmapOutput.Rd
man/plot_CombinedHsaMimat_miRNASeq.Rd
man/plot_GeneSymbol_Meth27.Rd
man/plot_GeneSymbol_Meth450.Rd
man/plot_GeneSymbol_Mutations.Rd
man/plot_GeneSymbol_RnaSeq.Rd
man/plot_GeneSymbol_RnaSeq2.Rd
man/plot_GeneSymbol_SNP6.Rd
man/plot_Probe_Meth27.Rd
man/plot_Probe_Meth450.Rd
