getMetadataPop_BarcodeSamplecode: getMetadataPop_BarcodeSamplecode
In GeneSurvey/TCGAGeneReport: Access to Gene Report Data
Description
Usage
Arguments
Value
Examples
View source: R/getMetadataPop.R
Description
A list of sample type codes for all barcodes in system.
Usage
1
getMetadataPop_BarcodeSamplecode(theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)
Arguments
theZipFile
Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT.
theVerboseFlag
Default: FALSE. TRUE means write all output, which can be very verbose.
Value
A vector of strings with names() giving the samples ids (barcodes).
Examples
1
#getMetadataPop_BarcodeSamplecode()
GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.
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Description Usage Arguments Value Examples
View source: R/getMetadataPop.R
Description
A list of sample type codes for all barcodes in system.
Usage
1 | getMetadataPop_BarcodeSamplecode(theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)
|
Arguments
theZipFile |
Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT. |
theVerboseFlag |
Default: FALSE. TRUE means write all output, which can be very verbose. |
Value
A vector of strings with names() giving the samples ids (barcodes).
Examples
1 | #getMetadataPop_BarcodeSamplecode()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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