Description Usage Arguments Value Examples
View source: R/getMetadata_Probe.R
Get the metadata about the probe(s) within a given range.
1 | getMetadata_ProbeByNeighbor_Meth450(theStartPosition, theStopPosition, theChromosome, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)
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theStartPosition |
Inclusive position to start search. |
theStopPosition |
Inclusive position to stop search. |
theChromosome |
Chromosome (as string) to search, such as "X", "Y", "1", or "21". |
theZipFile |
Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT. |
theVerboseFlag |
Default: FALSE. TRUE means write all output, which can be very verbose. |
A list of probe objects, with names() as probe ids, as described in getMetadata_Probe_ functions. The following functions work to pull data out of the objects.
get.Name |
get.Name |
get.Chromosome |
get.Chromosome |
get.ProbeLocation |
get.ProbeLocation |
get.Strand |
get.Strand |
get.GeneStructure |
get.GeneStructure |
1 | #getMetadata_ProbeByNeighbor_Meth450(7000000, 7005000, "X")
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