getOneToOne_GeneSymbol_List: getOneToOne_GeneSymbol_List

Description Usage Arguments Details Value Examples

View source: R/getOneToOne.R

Description

Get a sorted list of HGNC Gene Symbols from the one to one mapping

Usage

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getOneToOne_GeneSymbol_List(theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)

Arguments

theZipFile

Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT.

theVerboseFlag

Default: FALSE. TRUE means write all output, which can be very verbose.

Details

Get a sorted list of HGNC Gene Symbols from the one to one mapping. Note: these values may not correspond to values in provided data.

Value

A Vector of strings.

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", 
    theVerboseFlag = FALSE) 
{
    getOneToOne_List_internal(theZipFile, "getOneToOne_GeneSymbol_List", 
        theVerboseFlag = theVerboseFlag)
  }

GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.