plot_GeneSymbol_RnaSeq: plot_GeneSymbol_RnaSeq

In GeneSurvey/TCGAGeneReport: Access to Gene Report Data

Description

Plots stripcharts and replicate diagrams for the given arguments.

Usage

plot_GeneSymbol_RnaSeq(theGeneEq, theOutputDir, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE, theUseDeltaFlag = FALSE, theReplicateFlag=FALSE)

Arguments

theGeneEq	The gene symbol to plot which corresponds to an id from the appropriate getNames_ function.
theOutputDir	Directory to which to write files. Directory will be created if needed/possible.
theZipFile	Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip".
theVerboseFlag	Default: FALSE. TRUE means write all output, which can be very verbose.
theUseDeltaFlag	Default: FALSE. A flag indicating to use the differences in value between tumor and normal samples.
theReplicateFlag	Default: FALSE. A flag indicating to write the replicate plots.

Value

A list of files output.

Examples

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GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.