Description Usage Arguments Value Examples
Plots stripcharts and replicate diagrams for the given arguments.
1 | plot_GeneSymbol_Mutations(theGeneEq, theOutputDir, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE, theUseDeltaFlag = FALSE, theReplicateFlag = FALSE)
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theGeneEq |
The gene symbol to plot which corresponds to an id from the appropriate getNames_ function. |
theOutputDir |
Directory to which to write files. Directory will be created if needed/possible. |
theZipFile |
Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". |
theVerboseFlag |
Default: FALSE. TRUE means write all output, which can be very verbose. |
theUseDeltaFlag |
Default: FALSE. A flag indicating to use the differences in value between tumor and normal samples. |
theReplicateFlag |
Default: FALSE. A flag indicating to write the replicate plots. |
A list of files output.
1 | #
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