getOneToOne_UCID_GeneSymbol: getOneToOne_UCID_GeneSymbol

Description Usage Arguments Details Value Examples

View source: R/getOneToOne.R

Description

Given one or more gene symbols, give the list of corresponding UCSC ids

Usage

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getOneToOne_UCID_GeneSymbol(theGeneSymbol, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", theVerboseFlag = FALSE)

Arguments

theGeneSymbol

One or a vector of gene symbols from the getOneToOne_GeneSymbol_List. Note: these values may not correspond to values in provided data.

theZipFile

Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip". NOTE: this is a subdirectory of GENE_REPORT.

theVerboseFlag

Default: FALSE. TRUE means write all output, which can be very verbose.

Details

Given one or more gene symbols, give the list of corresponding UCSC ids. Note: these values may not correspond to values in provided data.

Value

A vector of values with the original request vector as names().

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (theGeneSymbol, theZipFile="/rsrch1/bcb/batcheffects/GENE_REPORT/GeneSurvey.zip", 
    theVerboseFlag = FALSE) 
{
    getOneToOne_Name_internal(theGeneSymbol, theZipFile, "getOneToOne_UCID_GeneSymbol", 
        theVerboseFlag = theVerboseFlag)
  }

GeneSurvey/TCGAGeneReport documentation built on May 6, 2019, 6:27 p.m.