get_nearest_genes: Find genes that are closest to a SNP.
In Gregor-Mendel-Institute/gwaR: A collection of R functions to conduct GWAS analysis (in Arabidopsis thaliana)
get_nearest_genes R Documentation
Find genes that are closest to a SNP.
Description
Find genes that are closest to a SNP.
Usage
get_nearest_genes(gwas_table = NULL, n_hit = 1)
Arguments
gwas_table
Object returned from format_gwas function
n_hit
The number of SNPs that should be looked up.
Details
Based on a GWAS table, returns the gene annotation that is closest to each SNP for the number of SNP specified. This function always returns the closest annotation. To limit the lookup range use get_overlapping_genes. Lookup is done via ensembl plants; requires internet connection.
See Also
format_gwas
get_overlapping_genes
Gregor-Mendel-Institute/gwaR documentation built on Feb. 8, 2023, 8:34 p.m.
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| get_nearest_genes | R Documentation |
Find genes that are closest to a SNP.
Description
Find genes that are closest to a SNP.
Usage
get_nearest_genes(gwas_table = NULL, n_hit = 1)
Arguments
gwas_table |
Object returned from |
n_hit |
The number of SNPs that should be looked up. |
Details
Based on a GWAS table, returns the gene annotation that is closest to each SNP for the number of SNP specified. This function always returns the closest annotation. To limit the lookup range use get_overlapping_genes. Lookup is done via ensembl plants; requires internet connection.
See Also
format_gwas
get_overlapping_genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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