read_limix: Read a GWAS result file from limix (csv) and put it into a...
In Gregor-Mendel-Institute/gwaR: A collection of R functions to conduct GWAS analysis (in Arabidopsis thaliana)
read_limix R Documentation
Read a GWAS result file from limix (csv) and put it into a specific (somewhat arbitrary) format.
Description
Read a GWAS result file from limix (csv) and put it into a specific (somewhat arbitrary) format.
Usage
read_limix(gwas_path)
Arguments
gwas_path
Path to a gwas result file containing SNP positions and p-values
Details
'format_gwas' returns a tibble containing SNP positions, -log10 transformed p-values and information whether a particular SNP passes a significance threshold after multiple testing correction (Bonferroni or Benjamini-Hochberg)
See Also
format_gwas
Gregor-Mendel-Institute/gwaR documentation built on Feb. 8, 2023, 8:34 p.m.
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| read_limix | R Documentation |
Read a GWAS result file from limix (csv) and put it into a specific (somewhat arbitrary) format.
Description
Read a GWAS result file from limix (csv) and put it into a specific (somewhat arbitrary) format.
Usage
read_limix(gwas_path)
Arguments
gwas_path |
Path to a gwas result file containing SNP positions and p-values |
Details
'format_gwas' returns a tibble containing SNP positions, -log10 transformed p-values and information whether a particular SNP passes a significance threshold after multiple testing correction (Bonferroni or Benjamini-Hochberg)
See Also
format_gwas
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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