plot_acc_map: Plot an interactive map of accessions that carry a SNP of...

View source: R/gwar.R

plot_acc_mapR Documentation

Plot an interactive map of accessions that carry a SNP of interest, needs a list of accessions with lng, lat fields

Description

Plot an interactive map of accessions that carry a SNP of interest, needs a list of accessions with lng, lat fields

Usage

plot_acc_map(gwas_table, SNPrank, SNPmatrix)

Arguments

gwas_table

Object returned from format_gwas function

SNPrank

The (-log10(p)) rank of the SNP of interest

SNPmatrix

provide path to control if accessions are based on 1001genomes.org or local matrix.

See Also

format_gwas


Gregor-Mendel-Institute/gwaR documentation built on Feb. 8, 2023, 8:34 p.m.