API for GuangchuangYu/clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters

Global functions
.onAttach Source code
DataSet Man page
GI2EG Source code
GSEA Man page Source code
Gff2GeneTable Man page Source code
KEGG_convert Source code
KEGG_path2extid Man page
`[.compareClusterResult` Source code
`[[.compareClusterResult` Source code
add_GO_Ontology Source code
as.data.frame.compareClusterResult Source code
as.data.frame.groupGOResult Source code
bitr Man page Source code
bitr_kegg Man page Source code
browseKEGG Man page Source code
buildGOmap Man page Source code
clusterProfiler Man page
clusterProfiler-package Man page
cnetplot Man page
compareCluster Man page Source code
dim.compareClusterResult Source code
dotplot Man page
download.KEGG.Path Source code
download_KEGG Man page Source code
dropGO Man page Source code
emapplot Man page
enrichDAVID Man page Source code
enrichGO Man page Source code
enrichKEGG Man page Source code
enrichMKEGG Man page Source code
enricher Man page Source code
excludeGOlevel Source code
excludeGOterm Source code
gcSample Man page
geneID Man page
geneID.groupGOResult Source code
geneInCategory Man page
geneInCategory.groupGOResult Source code
getGOLevel Source code
get_GO2Ontology_table Source code
get_GO2TERM_table Source code
get_GOTERM Source code
get_GO_data Source code
get_KEGG_Env Source code
get_go_ontology Source code
get_kegg_species Source code
get_species_name Source code
get_species_name_idx Source code
go2ont Man page Source code
go2term Man page Source code
gofilter Man page Source code
goplot Man page
groupGO Man page Source code
groupGOResult-class Man page
gseGO Man page Source code
gseKEGG Man page Source code
gseMKEGG Man page Source code
gseaplot Man page
gsfilter Man page
head.compareClusterResult Source code
heatplot Man page
idType Man page Source code
keepGOlevel Source code
keepGOterm Source code
kegg_rest Source code
kegg_species Man page
kegg_species_data Source code
ko2name Man page
merge_result Man page
parseEmbl Source code
parseEmblItem Source code
plotGOgraph Man page Source code
prepare_KEGG Source code
read.gmt Man page Source code
readGff Source code
reexports Man page
removeEmptyEntry.list Source code
ridgeplot Man page
search_kegg_organism Man page Source code
setReadable Man page
show,groupGOResult-method Man page
simplify Man page
simplify,compareClusterResult-method Man page
simplify,enrichResult-method Man page
simplify,gseaResult-method Man page
simplify_internal Source code
tail.compareClusterResult Source code
uniprot_get Man page Source code
viewKEGG Man page
GuangchuangYu/clusterProfiler documentation built on Nov. 6, 2019, 10:42 a.m.