gsePC: gsePC

In GuangchuangYu/clusterProfiler: A universal enrichment tool for interpreting omics data

gsePC

Description

GSEA analysis for Pathway Commons

Usage

gsePC(geneList, source, keyType, ...)

Arguments

geneList	a ranked gene list
source	Data source of Pathway Commons, e.g., 'reactome', 'kegg', 'pathbank', 'netpath', 'panther', etc.
keyType	specify the type of input 'gene' (one of 'hgnc' or 'uniprot')
...	additional parameters, see also the parameters supported by the GSEA() function

Details

This function performs GSEA using Pathway Commons

Value

A gseaResult instance

GuangchuangYu/clusterProfiler documentation built on April 12, 2024, 5:19 a.m.