R/generate_upstream_dashboards.R
In HARPgroup/cbp6:
Defines functions
generate_upstream_dashboards
# riv.seg: 'JU1_7690_7490'
# dat.source1: 'vahydro' #'vahydro', 'gage', or 'cbp_model'
# dat.source2: 'vahydro' #'vahydro', 'gage', or 'cbp_model'
# start.date: '1984-01-01' #YYYY-MM-DD
# end.date: '2000-12-31' #YYYY-MM-DD
# github_link: "C:\\Users\\danie\\Documents\\HARP\\GitHub"
# site: 'http://deq2.bse.vt.edu/d.dh'
# site.or.server: 'site'
# run.id1: '120'
# run.id2: '121'
# gage_number: '02018000'
# mod.phase1: 'p6/p6_gb604' # 'p6/p6_gb604' (phase 6) or "p532c-sova" (phase 5)
# mod.scenario1: 'CFBASE30Y20180615' #'CFBASE30Y20180615' or 'CBASE1808L55CY55R45P50R45P50Y' or p532cal_062211"
# mod.phase2: 'p6/p6_gb604' # 'p6/p6_gb604' (phase 6) or "p532c-sova" (phase 5)
# mod.scenario2: 'CBASE1808L55CY55R45P50R45P50Y' #'CFBASE30Y20180615' or 'CBASE1808L55CY55R45P50R45P50Y' or p532cal_062211"
generate_upstream_dashboards <- function(riv.seg, dat.source1, dat.source2, start.date, end.date, github_link,
site, site.or.server, run.id1, run.id2, gage_number, mod.phase1,
mod.scenario1, mod.phase2, mod.scenario2) {
cbp6_link = paste0(github_link, "/cbp6/code");
# CREATING OUTLET FOLDER AND FILE NAME
if (dat.source1 == 'vahydro') {
pt1 = paste0('run_', run.id1)
} else if (dat.source1 == 'gage') {
stop('gage cannot be used in this automated dashboard creator')
} else if (dat.source1 == 'cbp_model') {
pt1 = mod.scenario1
}
if (dat.source2 == 'vahydro') {
pt2 = paste0('run_', run.id2)
} else if (dat.source2 == 'gage') {
stop('gage cannot be used in this automated dashboard creator')
} else if (dat.source2 == 'cbp_model') {
pt2 = mod.scenario2
}
output.folder.name <- paste0(pt1, '_vs_', pt2)
setwd(cbp6_link)
dir.create(paste0('/opt/model/p6/p6_gb604/out/dashboards/', output.folder.name))
dash.output.dir <- paste0('/opt/model/p6/p6_gb604/out/dashboards/', output.folder.name)
# Sourcing upstream functions
source(paste0(cbp6_link,"/cbp6_functions.R"))
# All segs?
AllSegList <- c('OR5_7980_8200', 'OR2_8020_8130', 'OR2_8070_8120', 'OR4_8120_7890',
'OR2_8130_7900', 'OR5_8200_8370', 'OR4_8271_8120', 'TU3_8480_8680',
'TU1_8570_8680', 'TU3_8650_8800', 'TU4_8680_8810', 'TU2_8790_9070',
'TU4_8800_9290', 'TU4_8810_9000', 'BS4_8540_8441', 'BS3_8580_8440',
'BS2_8590_8440', 'BS1_8730_8540', 'MN2_8250_8190', 'MN4_8260_8400',
'MN0_8300_0001', 'MN4_8400_8380', 'MN4_8510_8380', 'MN2_8530_8510',
'NR6_7820_7960', 'NR1_7880_8050', 'BS3_8350_8330', 'BS4_8440_8441',
'MN3_7540_7680', 'MN1_7590_7860', 'MN1_7620_7710', 'MN3_7680_7860',
'MN4_7710_8161', 'MN2_7720_7830', 'MN1_7730_8160', 'MN3_7770_7930',
'MN4_7810_8080', 'MN2_7830_7950', 'MN3_7860_8080', 'MN3_7930_8010',
'MN4_7950_7710', 'MN1_7990_8100', 'MN3_8010_7950', 'MN4_8080_8110',
'MN2_8100_8190', 'MN5_8161_8160', 'MN3_8190_8260', 'MN5_8230_8161',
'NR6_7960_8050', 'NR1_8030_8051', 'NR6_8050_8051', 'NR6_8051_8000',
'NR6_8170_7960', 'NR6_8180_8051', 'NR2_8210_8180', 'NR3_8290_8170',
'NR3_8420_8430', 'NR3_8430_7820', 'NR6_8640_8500', 'NR3_8690_8500',
'NR5_8700_8640', 'NR3_8740_8500', 'NR5_8760_8640', 'NR1_8820_8760',
'NR5_8870_8760', 'NR1_8960_8870', 'NR1_9030_9080', 'NR5_9050_8870',
'NR5_9080_9050', 'NR4_9130_9080', 'NR1_9150_9050', 'NR3_9170_9130',
'NR3_9190_9170', 'NR3_9240_9130', 'NR2_9250_9170', 'NR3_9310_9240',
'OD3_8340_8520', 'OD3_8520_8621', 'OD2_8560_8630', 'OD6_8621_8470',
'OD3_8630_8720', 'OD6_8660_8621', 'OD2_8670_8890', 'OD3_8710_8470',
'OD3_8720_8900', 'OD5_8770_8780', 'OD5_8780_8660', 'OD2_8830_8710',
'OD2_8840_9020', 'OD3_8850_8931', 'OD5_8890_8770', 'OD5_8900_8770',
'OD1_8910_8930', 'OD2_8920_8830', 'OD3_8930_8931', 'OD3_8931_9140',
'OD5_8940_8780', 'OD4_8990_8900', 'OD3_9020_9110', 'OD4_9110_9140',
'OD4_9140_8990', 'OD1_9270_9110', 'OR2_7610_7780', 'OR2_7650_8070',
'OR2_7670_7840', 'OR1_7700_7980', 'OR3_7740_8271', 'OR2_7780_7890',
'OR2_7840_7970', 'OR5_7890_7970', 'OR2_7900_7740', 'OR5_7910_8410',
'OR5_7970_8200', 'OR1_8280_8020', 'OR1_8320_8271', 'OR5_8370_8410',
'OR5_8410_8470', 'OR2_8450_8490', 'OR2_8460_8271', 'OR7_8470_8490',
'TU2_8860_9000', 'TU3_8880_9230', 'TU2_8950_9040', 'TU2_8970_9280',
'TU5_9000_9280', 'TU1_9010_9290', 'TU3_9040_9180', 'TU3_9060_9230',
'TU2_9070_9090', 'TU2_9100_9200', 'TU3_9180_9090', 'TU2_9200_9180',
'TU1_9220_9200', 'TU3_9230_9260', 'NR2_8600_8700', 'NR6_8500_7820',
'EL0_4560_4562','EL0_4561_4562','EL0_4562_0001','EL2_4400_4590',
'EL2_4590_0001','EL2_5110_5270','EL2_5270_0001','PM0_4640_4820',
'PM1_3120_3400','PM1_3450_3400','PM1_3510_4000','PM1_3710_4040',
'PM1_4000_4290','PM1_4250_4500','PM1_4430_4200','PM1_4500_4580',
'PM2_2860_3040','PM2_3400_3340','PM2_4860_4670','PM3_3040_3340',
'PM3_4660_4620','PM3_4670_4660','PM4_3340_3341','PM4_3341_4040',
'PM4_4040_4410','PM7_4150_4290','PM7_4200_4410','PM7_4290_4200',
'PM7_4410_4620','PM7_4580_4820','PM7_4620_4580','PM7_4820_0001',
'PS0_6150_6160','PS0_6160_6161','PS1_4790_4830','PS1_4830_5080',
'PS2_5550_5560','PS2_5560_5100','PS2_6420_6360','PS2_6490_6420',
'PS2_6660_6490','PS2_6730_6660','PS3_5100_5080','PS3_5990_6161',
'PS3_6161_6280','PS3_6280_6230','PS3_6460_6230','PS4_5080_4380',
'PS4_5840_5240','PS4_6230_6360','PS4_6360_5840','PS5_4370_4150',
'PS5_4380_4370','PS5_5200_4380','PS5_5240_5200','PU0_3000_3090',
'PU0_3601_3602','PU0_3611_3530','PU0_3751_3752','PU0_3871_3690',
'PU0_5620_5380','PU0_6080_5620','PU1_3030_3440','PU1_3100_3690',
'PU1_3170_3580','PU1_3580_3780','PU1_3850_4190','PU1_3940_3970',
'PU1_4190_4300','PU1_4300_4440','PU1_4840_4760',
'PU1_5380_5050','PU1_5520_5210','PU1_5820_5380','PU2_2790_3290',
'PU2_2840_3080','PU2_3080_3640','PU2_3090_4050','PU2_3140_3680',
'PU2_3180_3370','PU2_3370_4020','PU2_3630_3590','PU2_3770_3600',
'PU2_3900_3750','PU2_4050_4180','PU2_4160_3930','PU2_4220_3900',
'PU2_4340_3860','PU2_4360_4160','PU2_4720_4750','PU2_4730_4220',
'PU2_5190_4310','PU2_5700_5210','PU2_6050_5190',
'PU3_2510_3290','PU3_3290_3390','PU3_3390_3730','PU3_3680_3890',
'PU3_3860_3610','PU3_4280_3860','PU3_4450_4440','PU3_5210_5050',
'PU4_3780_3930','PU4_3890_3990','PU4_3970_3890','PU4_3990_3780',
'PU4_4210_4170','PU4_4310_4210','PU4_4440_3970','PU4_5050_4310',
'PU5_3930_4170','PU5_4170_4020','PU6_3440_3590','PU6_3530_3440',
'PU6_3590_3640','PU6_3600_3602','PU6_3602_3730','PU6_3610_3530',
'PU6_3640_3600','PU6_3690_3610','PU6_3730_3750','PU6_3750_3752',
'PU6_3752_4080','PU6_3870_3690','PU6_4020_3870','PU6_4080_4180',
'PU6_4180_4150','JA0_7291_7290','JA2_7290_0001','JA1_7600_7570',
'JA1_7640_7280','JA2_7410_7470','JA2_7550_7280','JA2_7570_7480',
'JA4_7280_7340','JA4_7340_7470','JA4_7470_7480','JA5_7480_0001',
'JB3_6820_7053','JB3_7053_0001','PL1_4460_4780','PL1_4780_0001',
'JL1_6560_6440','JL1_6760_6910','JL1_6770_6850','JL1_6910_6960',
'JL1_6940_7200','JL1_7080_7190','JL1_7170_6800','JL1_7190_7250',
'JL1_7200_7250','JL1_7530_7430','JL2_6240_6520','JL2_6440_6441',
'JL2_6441_6520','JL2_6850_6890','JL2_7110_7120','JL2_7120_6970',
'JL2_7240_7350','JL2_7250_7090','JL2_7350_7090','JL3_7020_7100',
'JL3_7090_7150','JL4_6520_6710','JL4_6710_6740','JL6_6740_7100',
'JL6_6890_6990','JL6_6960_6970','JL6_6970_6740','JL6_6990_6960',
'JL6_7150_6890','JL6_7160_7440','JL6_7320_7150','JL6_7430_7320',
'JL6_7440_7430','JL7_6800_7070','JL7_7030_6800','JL7_7070_0001',
'JL7_7100_7030','JU1_6290_6590','JU1_6300_6650','JU1_6340_6650',
'JU1_6590_6600','JU1_6880_7260','JU1_7560_7500','JU1_7630_7490',
'JU1_7690_7490','JU1_7750_7560','JU2_6410_6640','JU2_6600_6810',
'JU2_6810_6900','JU2_7140_7330','JU2_7180_7380','JU2_7360_7000',
'JU2_7450_7360','JU3_6380_6900','JU3_6640_6790','JU3_6650_7300',
'JU3_6790_7260','JU3_6900_6950','JU3_6950_7330','JU3_7400_7510',
'JU3_7490_7400','JU4_7000_7300','JU4_7260_7380','JU4_7330_7000',
'JU4_7380_7160','JU5_7300_7510','JU5_7420_7160','JU5_7500_7420',
'JU5_7510_7500','PL0_5141_5140','PL1_5370_5470','PL2_4970_5250',
'PL2_5140_5360','PL2_5470_5360','PL3_5250_0001','PL3_5360_5250',
'PL0_5010_5130','PL1_5130_0001','PL0_5490_0001','PL0_5540_5490',
'PL2_5300_5630','PL2_5630_0001','PL0_5730_5690','PL1_5690_0001',
'PL0_5530_5710','PL0_5710_0001','RU2_5220_5640','RU2_5500_5610',
'RU2_5810_5610','RU2_5940_6200','RU2_6090_6220','RU2_6200_6170',
'RU2_6220_6170','RU3_5610_5640','RU3_6170_6040','RU4_5640_6030',
'RU4_6040_6030','RU5_6030_0001','XU0_4090_4270','XU0_4091_4270',
'XU0_4130_4070','XU2_4070_4330','XU2_4270_4650','XU2_4330_4480',
'XU2_4480_4650','XU3_4650_0001','YM1_6370_6620','YM2_6120_6430',
'YM3_6430_6620','YM4_6620_0001','YP1_6570_6680','YP1_6680_6670',
'YP2_6390_6330','YP3_6330_6700','YP3_6470_6690','YP3_6670_6720',
'YP3_6690_6720','YP3_6700_6670','YP4_6720_6750','YP4_6750_0001',
'YP0_6840_0001','YP0_6860_6840',
'EL0_5400_0001','EL1_5150_0001',
'EL1_5430_0001','EL1_5570_0001','EL1_6000_0001','JB0_7051_0001',
'JB0_7052_0001','JB1_8090_0001','JB2_7800_0001','PL0_4510_0001',
'PL0_5000_0001','PL0_5070_0001','PL0_5510_0001','PL0_5720_0001',
'PL0_5750_0001','PL0_5830_0001','PL1_4540_0001','PL1_5230_0001',
'PL1_5910_0001','RL0_6540_0001','RL1_6180_0001','YL2_6580_0001',
'PU1_4760_4451','PU2_4750_4451','PU3_4451_4450','PM1_3711_3710',
'PM1_4251_4250','PM1_4252_4250')
all.upstream.segs <- fn_ALL.upstream(riv.seg, AllSegList)
# Getting token
#retrieve rest token
source(paste0(github_link, "/auth.private"));
#load rest username and password, contained in auth.private file
token <- rest_token(site, token, rest_uname, rest_pw);
options(timeout=120); # set timeout to twice default level to avoid abort due to high traffic
for(i in 1:length(all.upstream.segs)) {
print(paste('Generating dashboard for segment', i, 'of', length(all.upstream.segs), sep = ' '))
riv.seg <- all.upstream.segs[i] #input for model data import
rmarkdown::render(paste0("Modularized_Dashboard.Rmd"), "pdf_document", output_dir = dash.output.dir, output_file = paste0(riv.seg, ".pdf"),
params = list(riv.seg = riv.seg, dat.source1 = dat.source1, dat.source2 = dat.source2,
start.date = start.date, end.date = end.date, github_link = github_link,
site = site, site.or.server = site.or.server, run.id1 = run.id1,
run.id2 = run.id2, gage_number = gage_number, mod.phase1 = mod.phase1,
mod.scenario1 = mod.scenario1, mod.phase2 = mod.phase2,
mod.scenario2 = mod.scenario2))
}
}
HARPgroup/cbp6 documentation built on Nov. 8, 2022, 1:22 a.m.
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Defines functions generate_upstream_dashboards
# riv.seg: 'JU1_7690_7490'
# dat.source1: 'vahydro' #'vahydro', 'gage', or 'cbp_model'
# dat.source2: 'vahydro' #'vahydro', 'gage', or 'cbp_model'
# start.date: '1984-01-01' #YYYY-MM-DD
# end.date: '2000-12-31' #YYYY-MM-DD
# github_link: "C:\\Users\\danie\\Documents\\HARP\\GitHub"
# site: 'http://deq2.bse.vt.edu/d.dh'
# site.or.server: 'site'
# run.id1: '120'
# run.id2: '121'
# gage_number: '02018000'
# mod.phase1: 'p6/p6_gb604' # 'p6/p6_gb604' (phase 6) or "p532c-sova" (phase 5)
# mod.scenario1: 'CFBASE30Y20180615' #'CFBASE30Y20180615' or 'CBASE1808L55CY55R45P50R45P50Y' or p532cal_062211"
# mod.phase2: 'p6/p6_gb604' # 'p6/p6_gb604' (phase 6) or "p532c-sova" (phase 5)
# mod.scenario2: 'CBASE1808L55CY55R45P50R45P50Y' #'CFBASE30Y20180615' or 'CBASE1808L55CY55R45P50R45P50Y' or p532cal_062211"
generate_upstream_dashboards <- function(riv.seg, dat.source1, dat.source2, start.date, end.date, github_link,
site, site.or.server, run.id1, run.id2, gage_number, mod.phase1,
mod.scenario1, mod.phase2, mod.scenario2) {
cbp6_link = paste0(github_link, "/cbp6/code");
# CREATING OUTLET FOLDER AND FILE NAME
if (dat.source1 == 'vahydro') {
pt1 = paste0('run_', run.id1)
} else if (dat.source1 == 'gage') {
stop('gage cannot be used in this automated dashboard creator')
} else if (dat.source1 == 'cbp_model') {
pt1 = mod.scenario1
}
if (dat.source2 == 'vahydro') {
pt2 = paste0('run_', run.id2)
} else if (dat.source2 == 'gage') {
stop('gage cannot be used in this automated dashboard creator')
} else if (dat.source2 == 'cbp_model') {
pt2 = mod.scenario2
}
output.folder.name <- paste0(pt1, '_vs_', pt2)
setwd(cbp6_link)
dir.create(paste0('/opt/model/p6/p6_gb604/out/dashboards/', output.folder.name))
dash.output.dir <- paste0('/opt/model/p6/p6_gb604/out/dashboards/', output.folder.name)
# Sourcing upstream functions
source(paste0(cbp6_link,"/cbp6_functions.R"))
# All segs?
AllSegList <- c('OR5_7980_8200', 'OR2_8020_8130', 'OR2_8070_8120', 'OR4_8120_7890',
'OR2_8130_7900', 'OR5_8200_8370', 'OR4_8271_8120', 'TU3_8480_8680',
'TU1_8570_8680', 'TU3_8650_8800', 'TU4_8680_8810', 'TU2_8790_9070',
'TU4_8800_9290', 'TU4_8810_9000', 'BS4_8540_8441', 'BS3_8580_8440',
'BS2_8590_8440', 'BS1_8730_8540', 'MN2_8250_8190', 'MN4_8260_8400',
'MN0_8300_0001', 'MN4_8400_8380', 'MN4_8510_8380', 'MN2_8530_8510',
'NR6_7820_7960', 'NR1_7880_8050', 'BS3_8350_8330', 'BS4_8440_8441',
'MN3_7540_7680', 'MN1_7590_7860', 'MN1_7620_7710', 'MN3_7680_7860',
'MN4_7710_8161', 'MN2_7720_7830', 'MN1_7730_8160', 'MN3_7770_7930',
'MN4_7810_8080', 'MN2_7830_7950', 'MN3_7860_8080', 'MN3_7930_8010',
'MN4_7950_7710', 'MN1_7990_8100', 'MN3_8010_7950', 'MN4_8080_8110',
'MN2_8100_8190', 'MN5_8161_8160', 'MN3_8190_8260', 'MN5_8230_8161',
'NR6_7960_8050', 'NR1_8030_8051', 'NR6_8050_8051', 'NR6_8051_8000',
'NR6_8170_7960', 'NR6_8180_8051', 'NR2_8210_8180', 'NR3_8290_8170',
'NR3_8420_8430', 'NR3_8430_7820', 'NR6_8640_8500', 'NR3_8690_8500',
'NR5_8700_8640', 'NR3_8740_8500', 'NR5_8760_8640', 'NR1_8820_8760',
'NR5_8870_8760', 'NR1_8960_8870', 'NR1_9030_9080', 'NR5_9050_8870',
'NR5_9080_9050', 'NR4_9130_9080', 'NR1_9150_9050', 'NR3_9170_9130',
'NR3_9190_9170', 'NR3_9240_9130', 'NR2_9250_9170', 'NR3_9310_9240',
'OD3_8340_8520', 'OD3_8520_8621', 'OD2_8560_8630', 'OD6_8621_8470',
'OD3_8630_8720', 'OD6_8660_8621', 'OD2_8670_8890', 'OD3_8710_8470',
'OD3_8720_8900', 'OD5_8770_8780', 'OD5_8780_8660', 'OD2_8830_8710',
'OD2_8840_9020', 'OD3_8850_8931', 'OD5_8890_8770', 'OD5_8900_8770',
'OD1_8910_8930', 'OD2_8920_8830', 'OD3_8930_8931', 'OD3_8931_9140',
'OD5_8940_8780', 'OD4_8990_8900', 'OD3_9020_9110', 'OD4_9110_9140',
'OD4_9140_8990', 'OD1_9270_9110', 'OR2_7610_7780', 'OR2_7650_8070',
'OR2_7670_7840', 'OR1_7700_7980', 'OR3_7740_8271', 'OR2_7780_7890',
'OR2_7840_7970', 'OR5_7890_7970', 'OR2_7900_7740', 'OR5_7910_8410',
'OR5_7970_8200', 'OR1_8280_8020', 'OR1_8320_8271', 'OR5_8370_8410',
'OR5_8410_8470', 'OR2_8450_8490', 'OR2_8460_8271', 'OR7_8470_8490',
'TU2_8860_9000', 'TU3_8880_9230', 'TU2_8950_9040', 'TU2_8970_9280',
'TU5_9000_9280', 'TU1_9010_9290', 'TU3_9040_9180', 'TU3_9060_9230',
'TU2_9070_9090', 'TU2_9100_9200', 'TU3_9180_9090', 'TU2_9200_9180',
'TU1_9220_9200', 'TU3_9230_9260', 'NR2_8600_8700', 'NR6_8500_7820',
'EL0_4560_4562','EL0_4561_4562','EL0_4562_0001','EL2_4400_4590',
'EL2_4590_0001','EL2_5110_5270','EL2_5270_0001','PM0_4640_4820',
'PM1_3120_3400','PM1_3450_3400','PM1_3510_4000','PM1_3710_4040',
'PM1_4000_4290','PM1_4250_4500','PM1_4430_4200','PM1_4500_4580',
'PM2_2860_3040','PM2_3400_3340','PM2_4860_4670','PM3_3040_3340',
'PM3_4660_4620','PM3_4670_4660','PM4_3340_3341','PM4_3341_4040',
'PM4_4040_4410','PM7_4150_4290','PM7_4200_4410','PM7_4290_4200',
'PM7_4410_4620','PM7_4580_4820','PM7_4620_4580','PM7_4820_0001',
'PS0_6150_6160','PS0_6160_6161','PS1_4790_4830','PS1_4830_5080',
'PS2_5550_5560','PS2_5560_5100','PS2_6420_6360','PS2_6490_6420',
'PS2_6660_6490','PS2_6730_6660','PS3_5100_5080','PS3_5990_6161',
'PS3_6161_6280','PS3_6280_6230','PS3_6460_6230','PS4_5080_4380',
'PS4_5840_5240','PS4_6230_6360','PS4_6360_5840','PS5_4370_4150',
'PS5_4380_4370','PS5_5200_4380','PS5_5240_5200','PU0_3000_3090',
'PU0_3601_3602','PU0_3611_3530','PU0_3751_3752','PU0_3871_3690',
'PU0_5620_5380','PU0_6080_5620','PU1_3030_3440','PU1_3100_3690',
'PU1_3170_3580','PU1_3580_3780','PU1_3850_4190','PU1_3940_3970',
'PU1_4190_4300','PU1_4300_4440','PU1_4840_4760',
'PU1_5380_5050','PU1_5520_5210','PU1_5820_5380','PU2_2790_3290',
'PU2_2840_3080','PU2_3080_3640','PU2_3090_4050','PU2_3140_3680',
'PU2_3180_3370','PU2_3370_4020','PU2_3630_3590','PU2_3770_3600',
'PU2_3900_3750','PU2_4050_4180','PU2_4160_3930','PU2_4220_3900',
'PU2_4340_3860','PU2_4360_4160','PU2_4720_4750','PU2_4730_4220',
'PU2_5190_4310','PU2_5700_5210','PU2_6050_5190',
'PU3_2510_3290','PU3_3290_3390','PU3_3390_3730','PU3_3680_3890',
'PU3_3860_3610','PU3_4280_3860','PU3_4450_4440','PU3_5210_5050',
'PU4_3780_3930','PU4_3890_3990','PU4_3970_3890','PU4_3990_3780',
'PU4_4210_4170','PU4_4310_4210','PU4_4440_3970','PU4_5050_4310',
'PU5_3930_4170','PU5_4170_4020','PU6_3440_3590','PU6_3530_3440',
'PU6_3590_3640','PU6_3600_3602','PU6_3602_3730','PU6_3610_3530',
'PU6_3640_3600','PU6_3690_3610','PU6_3730_3750','PU6_3750_3752',
'PU6_3752_4080','PU6_3870_3690','PU6_4020_3870','PU6_4080_4180',
'PU6_4180_4150','JA0_7291_7290','JA2_7290_0001','JA1_7600_7570',
'JA1_7640_7280','JA2_7410_7470','JA2_7550_7280','JA2_7570_7480',
'JA4_7280_7340','JA4_7340_7470','JA4_7470_7480','JA5_7480_0001',
'JB3_6820_7053','JB3_7053_0001','PL1_4460_4780','PL1_4780_0001',
'JL1_6560_6440','JL1_6760_6910','JL1_6770_6850','JL1_6910_6960',
'JL1_6940_7200','JL1_7080_7190','JL1_7170_6800','JL1_7190_7250',
'JL1_7200_7250','JL1_7530_7430','JL2_6240_6520','JL2_6440_6441',
'JL2_6441_6520','JL2_6850_6890','JL2_7110_7120','JL2_7120_6970',
'JL2_7240_7350','JL2_7250_7090','JL2_7350_7090','JL3_7020_7100',
'JL3_7090_7150','JL4_6520_6710','JL4_6710_6740','JL6_6740_7100',
'JL6_6890_6990','JL6_6960_6970','JL6_6970_6740','JL6_6990_6960',
'JL6_7150_6890','JL6_7160_7440','JL6_7320_7150','JL6_7430_7320',
'JL6_7440_7430','JL7_6800_7070','JL7_7030_6800','JL7_7070_0001',
'JL7_7100_7030','JU1_6290_6590','JU1_6300_6650','JU1_6340_6650',
'JU1_6590_6600','JU1_6880_7260','JU1_7560_7500','JU1_7630_7490',
'JU1_7690_7490','JU1_7750_7560','JU2_6410_6640','JU2_6600_6810',
'JU2_6810_6900','JU2_7140_7330','JU2_7180_7380','JU2_7360_7000',
'JU2_7450_7360','JU3_6380_6900','JU3_6640_6790','JU3_6650_7300',
'JU3_6790_7260','JU3_6900_6950','JU3_6950_7330','JU3_7400_7510',
'JU3_7490_7400','JU4_7000_7300','JU4_7260_7380','JU4_7330_7000',
'JU4_7380_7160','JU5_7300_7510','JU5_7420_7160','JU5_7500_7420',
'JU5_7510_7500','PL0_5141_5140','PL1_5370_5470','PL2_4970_5250',
'PL2_5140_5360','PL2_5470_5360','PL3_5250_0001','PL3_5360_5250',
'PL0_5010_5130','PL1_5130_0001','PL0_5490_0001','PL0_5540_5490',
'PL2_5300_5630','PL2_5630_0001','PL0_5730_5690','PL1_5690_0001',
'PL0_5530_5710','PL0_5710_0001','RU2_5220_5640','RU2_5500_5610',
'RU2_5810_5610','RU2_5940_6200','RU2_6090_6220','RU2_6200_6170',
'RU2_6220_6170','RU3_5610_5640','RU3_6170_6040','RU4_5640_6030',
'RU4_6040_6030','RU5_6030_0001','XU0_4090_4270','XU0_4091_4270',
'XU0_4130_4070','XU2_4070_4330','XU2_4270_4650','XU2_4330_4480',
'XU2_4480_4650','XU3_4650_0001','YM1_6370_6620','YM2_6120_6430',
'YM3_6430_6620','YM4_6620_0001','YP1_6570_6680','YP1_6680_6670',
'YP2_6390_6330','YP3_6330_6700','YP3_6470_6690','YP3_6670_6720',
'YP3_6690_6720','YP3_6700_6670','YP4_6720_6750','YP4_6750_0001',
'YP0_6840_0001','YP0_6860_6840',
'EL0_5400_0001','EL1_5150_0001',
'EL1_5430_0001','EL1_5570_0001','EL1_6000_0001','JB0_7051_0001',
'JB0_7052_0001','JB1_8090_0001','JB2_7800_0001','PL0_4510_0001',
'PL0_5000_0001','PL0_5070_0001','PL0_5510_0001','PL0_5720_0001',
'PL0_5750_0001','PL0_5830_0001','PL1_4540_0001','PL1_5230_0001',
'PL1_5910_0001','RL0_6540_0001','RL1_6180_0001','YL2_6580_0001',
'PU1_4760_4451','PU2_4750_4451','PU3_4451_4450','PM1_3711_3710',
'PM1_4251_4250','PM1_4252_4250')
all.upstream.segs <- fn_ALL.upstream(riv.seg, AllSegList)
# Getting token
#retrieve rest token
source(paste0(github_link, "/auth.private"));
#load rest username and password, contained in auth.private file
token <- rest_token(site, token, rest_uname, rest_pw);
options(timeout=120); # set timeout to twice default level to avoid abort due to high traffic
for(i in 1:length(all.upstream.segs)) {
print(paste('Generating dashboard for segment', i, 'of', length(all.upstream.segs), sep = ' '))
riv.seg <- all.upstream.segs[i] #input for model data import
rmarkdown::render(paste0("Modularized_Dashboard.Rmd"), "pdf_document", output_dir = dash.output.dir, output_file = paste0(riv.seg, ".pdf"),
params = list(riv.seg = riv.seg, dat.source1 = dat.source1, dat.source2 = dat.source2,
start.date = start.date, end.date = end.date, github_link = github_link,
site = site, site.or.server = site.or.server, run.id1 = run.id1,
run.id2 = run.id2, gage_number = gage_number, mod.phase1 = mod.phase1,
mod.scenario1 = mod.scenario1, mod.phase2 = mod.phase2,
mod.scenario2 = mod.scenario2))
}
}
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