get_consensus_cutoff: Returns the consensus cutoff to use based on a given models...

Description Usage Arguments

View source: R/consensus_cutoff.R

Description

This function will find the model that matches your input parameters and use it to predict the appropriate consensus cutoff for your dataset

Usage

1
get_consensus_cutoff(pl, main_offspring_size, models, phi = 1/50)

Arguments

pl

PID length (9)

main_offspring_size

The size of the largest bin in the dataset produced by the binner. NB! This must be the size of the bin BEFORE outlier removal

models

A data.frame containing the parameters for various models. As produced by build_cutoff_models.

phi

Sequencing read error rate (1/50)


HIVDiversity/MotifBinner2 documentation built on May 6, 2019, 6:44 p.m.