buildConfig_nol_test: Test config builder for non-overlapping reads
In HIVDiversity/MotifBinner2: Processes NGS Primer ID Datasets
Description
Test config builder for non-overlapping reads
Usage
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buildConfig_nol_test(fwd_file, fwd_primer_seq, fwd_primer_lens,
fwd_min_score, rev_file, rev_primer_seq, rev_primer_lens, rev_min_score,
fwd_pid_in_which_fragment, rev_pid_in_which_fragment, max_seq = NULL,
min_read_length = 295,
pattern_to_chop_from_names = " [0-9]:N:[0-9]*:[0-9]*$",
output_dir = "/fridge/data/MotifBinner2_test",
base_for_names = "CAP129_2040_009wpi_C2C3",
intermediate_reports = TRUE, erase_history = TRUE, verbosity = 3,
report_type = c("html"), ncpu = 4, bins_to_process = Inf,
header_format = "MiSeq", front_gaps_allowed = 0)
HIVDiversity/MotifBinner2 documentation built on May 6, 2019, 6:44 p.m.
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Description
Test config builder for non-overlapping reads
Usage
1 2 3 4 5 6 7 8 9 10 | buildConfig_nol_test(fwd_file, fwd_primer_seq, fwd_primer_lens,
fwd_min_score, rev_file, rev_primer_seq, rev_primer_lens, rev_min_score,
fwd_pid_in_which_fragment, rev_pid_in_which_fragment, max_seq = NULL,
min_read_length = 295,
pattern_to_chop_from_names = " [0-9]:N:[0-9]*:[0-9]*$",
output_dir = "/fridge/data/MotifBinner2_test",
base_for_names = "CAP129_2040_009wpi_C2C3",
intermediate_reports = TRUE, erase_history = TRUE, verbosity = 3,
report_type = c("html"), ncpu = 4, bins_to_process = Inf,
header_format = "MiSeq", front_gaps_allowed = 0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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