buildConfig: Builds the overlapping or non-overlapping production configs

In HIVDiversity/MotifBinner2: Processes NGS Primer ID Datasets

Description

Builds the overlapping or non-overlapping production configs

Usage

buildConfig(overlapping, fwd_file, fwd_primer_seq, fwd_primer_lens,
  fwd_min_score, rev_file, rev_primer_seq, rev_primer_lens, rev_min_score,
  fwd_pid_in_which_fragment, rev_pid_in_which_fragment, max_seq = NULL,
  min_read_length = 295,
  pattern_to_chop_from_names = " [0-9]:N:[0-9]*:[0-9]*$",
  output_dir = "/fridge/data/MotifBinner2_test",
  base_for_names = "CAP129_2040_009wpi_C2C3",
  intermediate_reports = TRUE, erase_history = FALSE, verbosity = 3,
  report_type = c("html"), ncpu = 4, bins_to_process = Inf,
  merged_read_length = 100, header_format = "MiSeq",
  front_gaps_allowed = 0)

HIVDiversity/MotifBinner2 documentation built on May 6, 2019, 6:44 p.m.