addClipped: Extrapolates mapping location from clipped, aligned reads

Description Usage Arguments Value Author(s)

Description

Extrapolates the mapping location of a read by assuming that the clipped regions should map adjacent to the mapped locations. This is not always a good assumption, particularly in the case of chimeric reads!

Usage

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addClipped(bam, ...)

## S4 method for signature 'GAlignments'
addClipped(bam, ...)

Arguments

bam

A GAlignments object

...

additional arguments

Value

A GRanges representation of the extended mapping locations

Author(s)

Helen Lindsay


HLindsay/CrispRVariants documentation built on May 28, 2019, 12:40 p.m.