addClipped: Extrapolates mapping location from clipped, aligned reads
In HLindsay/CrispRVariants: Tools for counting and visualising mutations in a target location
Description
Usage
Arguments
Value
Author(s)
Description
Extrapolates the mapping location of a read by assuming that
the clipped regions should map adjacent to the mapped locations. This
is not always a good assumption, particularly in the case of chimeric reads!
Usage
1
2
3
4
addClipped(bam, ...)
## S4 method for signature 'GAlignments'
addClipped(bam, ...)
Arguments
bam
A GAlignments object
...
additional arguments
Value
A GRanges representation of the extended
mapping locations
Author(s)
Helen Lindsay
HLindsay/CrispRVariants documentation built on May 28, 2019, 12:40 p.m.
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Description Usage Arguments Value Author(s)
Description
Extrapolates the mapping location of a read by assuming that the clipped regions should map adjacent to the mapped locations. This is not always a good assumption, particularly in the case of chimeric reads!
Usage
1 2 3 4 | addClipped(bam, ...)
## S4 method for signature 'GAlignments'
addClipped(bam, ...)
|
Arguments
bam |
A GAlignments object |
... |
additional arguments |
Value
A GRanges representation of the extended
mapping locations
Author(s)
Helen Lindsay
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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