selectOps: selectOps

In HLindsay/CrispRVariants: Tools for counting and visualising mutations in a target location

Description

select CIGAR operations in a region of interest.

Usage

selectOps(cigar, ...)

## S4 method for signature 'character'
selectOps(cigar, ...,
  ops = GenomicAlignments::CIGAR_OPS, op.regions = NULL, pos = 1L)

Arguments

cigar	CIGAR strings
...	Extra arguments (Not currently used)
ops	CIGAR operations to consider (Default: all)
op.regions	(GRanges) Return operations only in these regions
pos	An offset for the cigar ranges

Value

A GRanges list of opertion locations in reference space with a metadata column for the operation width in query space.

Author(s)

Helen Lindsay

HLindsay/CrispRVariants documentation built on May 28, 2019, 12:40 p.m.