findSNVs: Find frequent SNVs

In HLindsay/CrispRVariants: Tools for counting and visualising mutations in a target location

Description

Find single nucleotide variants (SNVs) above a specified frequency in a table of variants.

Usage

findSNVs(obj, ...)

## S4 method for signature 'CrisprSet'
findSNVs(obj, ..., freq = 0.25,
  include.chimeras = TRUE)

Arguments

obj	An object containing variant counts
...	additional arguments
freq	minimum frequency snv to return (Default: 0.25)
include.chimeras	include chimeric reads when calculating SNV frequencies (Default: TRUE)

Value

A vector of SNVs and their frequencies

Author(s)

Helen Lindsay

HLindsay/CrispRVariants documentation built on May 28, 2019, 12:40 p.m.