getChimeras: Get chimeric alignments
In HLindsay/CrispRVariants: Tools for counting and visualising mutations in a target location
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Return chimeric alignments from a collection of aligned sequences
Usage
1
2
3
4
getChimeras(obj, ...)
## S4 method for signature 'CrisprSet'
getChimeras(obj, ..., sample)
Arguments
obj
An object containing aligned sequences
...
additional arguments
sample
The sample name or sample index to return
Value
A GAlignment object containing the chimeric read groups
Author(s)
Helen Lindsay
Examples
1
2
data("gol_clutch1")
chimeras <- getChimeras(gol, sample = 2)
HLindsay/CrispRVariants documentation built on May 28, 2019, 12:40 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Return chimeric alignments from a collection of aligned sequences
Usage
1 2 3 4 | getChimeras(obj, ...)
## S4 method for signature 'CrisprSet'
getChimeras(obj, ..., sample)
|
Arguments
obj |
An object containing aligned sequences |
... |
additional arguments |
sample |
The sample name or sample index to return |
Value
A GAlignment object containing the chimeric read groups
Author(s)
Helen Lindsay
Examples
1 2 | data("gol_clutch1")
chimeras <- getChimeras(gol, sample = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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