summary_cds | R Documentation |
A summary statistics of specific CDS features is returned.
summary_cds(file, organism)
file |
file path to a CDS file in |
organism |
character string specifying the organism at hand. |
The summary statistics include:
total_seqs
:
nnn_abs
: The total number of NNN's
(over all chromosomes/scaffolds/contigs) in all coding sequences combined
nnn_perc
: The percentage (relative frequency) of NNN's
(over all chromosomes/scaffolds/contigs) compared to the total number of
nucleotides of all coding sequences
Hajk-Georg Drost
getCollection
, getCDS
, read_cds
, summary_genome
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