revdep/problems.md

In HenrikBengtsson/PSCBS: Analysis of Parent-Specific DNA Copy Numbers

aroma.core

• Version: 3.3.0
• GitHub: https://github.com/HenrikBengtsson/aroma.core
• Source code: https://github.com/cran/aroma.core
• Date/Publication: 2022-11-15 18:30:13 UTC
• Number of recursive dependencies: 48

Run revdep_details(, "aroma.core") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

EstMix

• Version: 1.0.1
• GitHub: NA
• Source code: https://github.com/cran/EstMix
• Date/Publication: 2018-09-13 04:20:02 UTC
• Number of recursive dependencies: 16

Run revdep_details(, "EstMix") for more info

In both

• checking installed package size ... NOTE installed size is 5.6Mb sub-directories of 1Mb or more: extdata 1.3Mb libs 4.1Mb

PureCN

• Version: 2.4.0
• GitHub: https://github.com/lima1/PureCN
• Source code: https://github.com/cran/PureCN
• Date/Publication: 2022-11-01
• Number of recursive dependencies: 159

Run revdep_details(, "PureCN") for more info

In both

• checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘Quick.Rmd’ using rmarkdown Loading required package: DNAcopy Loading required package: VariantAnnotation Loading required package: BiocGenerics

  Attaching package: 'BiocGenerics'

  The following objects are masked from 'package:stats':

  ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘PureCN.Rnw’

  SUMMARY: processing the following file failed: ‘PureCN.Rnw’

  Error: Vignette re-building failed. Execution halted ```

• checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘genomicsdb’

• checking installed package size ... NOTE installed size is 7.7Mb sub-directories of 1Mb or more: doc 3.5Mb extdata 2.7Mb

HenrikBengtsson/PSCBS documentation built on Feb. 20, 2024, 9:01 p.m.