plotTracks.CBS: Plots copy numbers along the genome

In HenrikBengtsson/PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Plots copy numbers along the genome

Description

Plots copy numbers along the genome for one or more chromosomes. Each type of track is plotted in its own panel.

Usage

## S3 method for class 'CBS'
plotTracks(x, scatter=TRUE, pch=20, col="gray", meanCol="purple", cex=1, grid=FALSE,
  Clim="auto", xScale=1e-06, Clab="auto", ..., byIndex=FALSE, mar=NULL, add=FALSE)

Arguments

x	A result object returned by segmentByCBS().
pch	The type of points to use.
Clim	The range of copy numbers.
xScale	The scale factor used for genomic positions.
...	Not used.
add	If TRUE, the panels plotted are added to the existing plot, otherwise a new plot is created.

Value

Returns nothing.

Author(s)

Henrik Bengtsson

HenrikBengtsson/PSCBS documentation built on Feb. 20, 2024, 9:01 p.m.