run_PERMANOVA: Permutational Multivariate Analysis of Variance (PERMANOVA)...
In HuaZou/MyRtools: Statistic Approaches on Data Analysis
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/Global_PERMANOVA.R
Description
The PERMANOVA is aimed to assess the association between the overall profile and metadata information.
It comprises permutation and ANOVA by using the F distribution to acquire the statistic.
Usage
1
run_PERMANOVA(dataset=ExpressionSet, Group_info="Group", Group_name=NULL, Distance="bray")
Arguments
Group_info,
Character; design factor(default: "Group").
Group_name,
Character; the group for filtering(default: NULL).
Distance,
Character; Normalizing feature(default: Distance="bray").
Expression,
ExpressionSet; (Required) A ExpressionSet object contains expression profile and
metadata including the continuous and categorical variables.
Details
12/4/2021 Guangzhou China
Value
PERMANOVA's results
Author(s)
Hua Zou
Examples
1
2
3
data("ExprSetRawRB")
PERMANOVA_res <- run_PERMANOVA(dataset=ExprSetRawRB, Group_info="Group", Group_name=NULL, Distance="bray")
HuaZou/MyRtools documentation built on Jan. 6, 2022, 8:56 a.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/Global_PERMANOVA.R
Description
The PERMANOVA is aimed to assess the association between the overall profile and metadata information. It comprises permutation and ANOVA by using the F distribution to acquire the statistic.
Usage
1 | run_PERMANOVA(dataset=ExpressionSet, Group_info="Group", Group_name=NULL, Distance="bray")
|
Arguments
Group_info, |
Character; design factor(default: "Group"). |
Group_name, |
Character; the group for filtering(default: NULL). |
Distance, |
Character; Normalizing feature(default: Distance="bray"). |
Expression, |
ExpressionSet; (Required) A |
Details
12/4/2021 Guangzhou China
Value
PERMANOVA's results
Author(s)
Hua Zou
Examples
1 2 3 | data("ExprSetRawRB")
PERMANOVA_res <- run_PERMANOVA(dataset=ExprSetRawRB, Group_info="Group", Group_name=NULL, Distance="bray")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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