FSWE.generateReports: FSWE.generateReports
In IFIproteomics/LFQbench: Label Free Quantitation benchmark package
View source: R/fswe.generate_reports.r
FSWE.generateReports R Documentation
FSWE.generateReports
Description
It generates peptide and protein reports compatible with LFQbench, by following the data processing
suggested in (#Ref_to_article).
Usage
FSWE.generateReports(experimentFile, plotHistogram = F, plotHistNAs = F,
reportSequences = F, peptide.list = NULL, protein.list = NULL,
singleHits = F, softwareSource = "guess",
working_dir = LFQbench.Config$DataRootFolder, keep_original_names = FALSE,
outputFileNameSuffix = NULL, minimumHitsPerSample = 2, top.N = 3,
top.N.min = 2, integrationMethod = "topN_individual",
quench.minPepsToRemove = 10, quench.removeTop = 3)
IFIproteomics/LFQbench documentation built on March 2, 2023, 9:45 a.m.
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View source: R/fswe.generate_reports.r
| FSWE.generateReports | R Documentation |
FSWE.generateReports
Description
It generates peptide and protein reports compatible with LFQbench, by following the data processing suggested in (#Ref_to_article).
Usage
FSWE.generateReports(experimentFile, plotHistogram = F, plotHistNAs = F, reportSequences = F, peptide.list = NULL, protein.list = NULL, singleHits = F, softwareSource = "guess", working_dir = LFQbench.Config$DataRootFolder, keep_original_names = FALSE, outputFileNameSuffix = NULL, minimumHitsPerSample = 2, top.N = 3, top.N.min = 2, integrationMethod = "topN_individual", quench.minPepsToRemove = 10, quench.removeTop = 3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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