LFQbench.batchProcessFiles: LFQbench.batchProcessFiles

In IFIproteomics/LFQbench: Label Free Quantitation benchmark package

LFQbench.batchProcessFiles

Description

Wrapper function for processing a batch of input files. Plots, metrics and log files will be automatically put into subfolders of a root folder. PLEASE DEFINE THE ROOT FOLDER BEFORE RUNNING THIS FUNCTION!!! Expected structure of root folder:

Usage

LFQbench.batchProcessFiles(inputFiles, storeResultSetsImage = T,
  storeSampleMeans = F, storeSpeciesSeparation = F, storeIDs = F,
  storeIdStats = T, storeLogRatios = F, storePlots = T,
  storeSampleCVs = F, storeMetrics = T)

Arguments

inputFiles

a list of files to process

Details

- subfolder "input" contains automatically discovered input files - subfolder "log" contains calculated metrics, stored result sets and other exported information. - subfolder "plot" contains generated plots.

In case the given root folder is empty, all needed file structures will be created automatically. You can use the freshly created structures to put your input files and rerun LFQbench.

IFIproteomics/LFQbench documentation built on March 2, 2023, 9:45 a.m.