LFQbench.batchProcessRootFolder: LFQbench.batchProcessRootFolder

In IFIproteomics/LFQbench: Label Free Quantitation benchmark package

LFQbench.batchProcessRootFolder

Description

Wrapper function for processing a batch of input files automatically discovered from a predefined root folder. Expected structure of root folder:

Usage

LFQbench.batchProcessRootFolder(rootFolder = LFQbench.Config$DataRootFolder,
  ...)

Arguments

rootFolder

the root folder for batch processing

Details

- subfolder "input" contains automatically discovered input files - subfolder "log" contains calculated metrics, stored result sets and other exported information. - subfolder "plot" contains generated plots.

In case the given root folder is empty, all needed file structures will be created automatically. You can use the freshly created structures to put your input files and rerun LFQbench.

IFIproteomics/LFQbench documentation built on March 2, 2023, 9:45 a.m.