Files in IFIproteomics/LFQbench
Label Free Quantitation benchmark package

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LFQbench.Rproj
LICENSE.md
NAMESPACE
R/fswe.cfg.r R/fswe.cfg.softwares.r R/fswe.com.r R/fswe.generate_reports.r R/fswe.scale_intensities.R R/lfqbench.access.r R/lfqbench.batch.r R/lfqbench.cfg.r R/lfqbench.com.r R/lfqbench.plot.r R/lfqbench.proc.r README.md
ext/data/vignette_examples/hye110/ISOQuant_pep_2016-010_HYE110_UDMSE_peptide_quantification_report.csv
ext/data/vignette_examples/hye124/PeakView_TTOF6600_64w_benchmark_example.xlsx
ext/data/vignette_examples/hye124/Spectronaut_TTOF6600_64w_example.tsv
inst/doc/LFQbench.R inst/doc/LFQbench.Rmd
inst/doc/LFQbench.html
inst/doc/LFQbench.pdf
inst/scripts/.gitignore
inst/scripts/ExperimentSimulation.R
logo.png
logo_stacked.png
man/FSWE.addModification.Rd man/FSWE.addSoftwareConfiguration.Rd man/FSWE.generateReports.Rd man/FSWE.init.defaultSoftwares.Rd man/FSWE.initConfiguration.Rd man/FSWE.listModifications.Rd man/FSWE.scaleIntensities.Rd man/FSWE.setDatasetInjectionNames.Rd man/FSWE.setSpeciesTags.Rd man/FSWE.simExperiment.Rd man/FSWE.switchSoftwareConfiguration.Rd man/LFQbench.batchProcessFiles.Rd man/LFQbench.batchProcessRootFolder.Rd man/LFQbench.changeConfiguration.Rd man/LFQbench.explainMetrics.Rd man/LFQbench.getMetrics.Rd man/LFQbench.initConfiguration.Rd man/LFQbench.plotProteinDispersionBySample.Rd man/LFQbench.plotProteinDispersionBySpecies.Rd man/LFQbench.plotResultSet.Rd man/LFQbench.plotSampleComposition.Rd man/LFQbench.plotSpeciesLegends.Rd man/LFQbench.plotToFile.Rd man/LFQbench.processConfig.Rd man/LFQbench.processDocSet.Rd man/LFQbench.processFile.Rd man/LFQbench.setDataRootFolder.Rd man/LFQbench.showAllSpeciesQC.Rd man/LFQbench.showDistributionDensityPlot.Rd man/LFQbench.showLogRatioBoxPlot.Rd man/LFQbench.showMetrics.Rd man/LFQbench.showQuantBarPlot.Rd man/LFQbench.showScatterAndBoxPlot.Rd man/LFQbench.showScatterAndDensityPlot.Rd man/LFQbench.showScatterPlot.Rd man/LFQbench.showSingleSpeciesQC.Rd man/addAxes.Rd man/addXLab.Rd man/addYLab.Rd man/avgNA.Rd man/avg_top_n.Rd man/createNumericPairs.Rd man/emptyPlot.Rd man/evalCommandLineArguments.Rd man/getCombinedLogRatios.Rd man/getCombinedProteinRSDs.Rd man/getOutlierIdx.Rd man/getQuantileAccuracy.Rd man/getQuantilePrecision.Rd man/getQuantileSeparation.Rd man/getRangedAccuracy.Rd man/getRangedPrecision.Rd man/getRangedSepRate.Rd man/getSepRate.Rd man/guessOrganism.Rd man/guessSep.Rd man/guessSoftwareSource.Rd man/loadLibrary.Rd man/logIdStatistics.Rd man/makeDocSet.Rd man/makeEverythingInOneFolderDocSet.Rd man/makeScatter.Rd man/median_all.Rd man/median_quench.Rd man/mkdir.Rd man/moveFiles.Rd man/plotSpeciesLegend.Rd man/qboxplot.Rd man/rms.Rd man/saveIDs.Rd man/saveLogRatios.Rd man/saveMetrics.Rd man/saveSampleCVs.Rd man/saveSampleMeans.Rd man/saveSpeciesSeparation.Rd man/single_hits.Rd man/spiner.Rd man/stopHere.Rd man/sumNA.Rd man/sum_top_n.Rd man/take1stentry.Rd vignettes/LFQbench.Rmd
IFIproteomics/LFQbench documentation built on May 7, 2019, 5:04 a.m.