filterByControl: filterByControl
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
View source: R/ascend_filtering.R
Description
Filter cells in an expression matrix based on the expression levels of a
specific control.
This function should be used AFTER the cells have undergone general filtering
with the filterByOutliers function.
Usage
1
filterByControl(object, control = NULL, pct.threshold = 20)
Arguments
object
An EMSet.
control
Name of the control group, as used in the named list
supplied to the EMSet object.
pct.threshold
Percentage threshold to filter cells by, as a whole
number. Default: 20.
Value
An EMSet with filtered controls.
Examples
1
2
3
4
5
6
# Load EMSet
raw_emset <- ascend::raw_set
# Filter by outliers with default settings
filtered_emset <- filterByControl(raw_emset, control = "Mt",
pct.threshold = 20)
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
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Description Usage Arguments Value Examples
View source: R/ascend_filtering.R
Description
Filter cells in an expression matrix based on the expression levels of a
specific control.
This function should be used AFTER the cells have undergone general filtering
with the filterByOutliers function.
Usage
1 | filterByControl(object, control = NULL, pct.threshold = 20)
|
Arguments
object |
An EMSet. |
control |
Name of the control group, as used in the named list supplied to the EMSet object. |
pct.threshold |
Percentage threshold to filter cells by, as a whole number. Default: 20. |
Value
An EMSet with filtered controls.
Examples
1 2 3 4 5 6 | # Load EMSet
raw_emset <- ascend::raw_set
# Filter by outliers with default settings
filtered_emset <- filterByControl(raw_emset, control = "Mt",
pct.threshold = 20)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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