Files in IMB-Computational-Genomics-Lab/ascend
ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression

.RBuildginore
.RData
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R R/ascend.R R/ascend_DESeq.R R/ascend_DESeq2.R R/ascend_cellranger.R R/ascend_clustering.R R/ascend_confoundingfactors.R R/ascend_diffexpression.R R/ascend_dimreduction.R R/ascend_filtering.R R/ascend_getters.R R/ascend_imports.R R/ascend_methods.R R/ascend_normalisation.R R/ascend_objects.R R/ascend_plots.R R/ascend_scran.R R/ascend_setters.R R/ascend_subsetters.R R/ascend_utilities.R R/data.R
R/sysdata.rda
README.md
ascend.Rproj
ascend_banner.png
data/analyzed_set.rda
data/raw.rda
data/raw_set.rda
inst/NEWS
man/EMSet-class.Rd man/EMSet.Rd man/addGeneLabel.Rd man/analyzed_set.Rd man/ascend.Rd man/calcGeoMeansDense.Rd man/calcGeoMeansSparse.Rd man/calcNormFactorDense.Rd man/calcNormFactorSparse.Rd man/calculateCV.Rd man/calculateQC.Rd man/clusterAnalysis.Rd man/colInfo.Rd man/controls.Rd man/convert.Rd man/convertGeneID.Rd man/convertSparse.Rd man/excludeControl.Rd man/filterByControl.Rd man/filterByOutliers.Rd man/filterLowAbundanceGenes.Rd man/func_DESeq.Rd man/loadCellRanger.Rd man/normaliseBatches.Rd man/normaliseByRLE.Rd man/plotAverageGeneCount.Rd man/plotBatchNormQC.Rd man/plotControlHist.Rd man/plotControlPctPerSample.Rd man/plotDendrogram.Rd man/plotFeatureHist.Rd man/plotGeneNumber.Rd man/plotGeneralQC.Rd man/plotLibsizeBoxplot.Rd man/plotLibsizeHist.Rd man/plotLibsizePerSample.Rd man/plotMDS.Rd man/plotNormQC.Rd man/plotPCA.Rd man/plotPCAVariance.Rd man/plotSmoothScatter.Rd man/plotStability.Rd man/plotStabilityDendro.Rd man/plotTSNE.Rd man/plotTopGenesBoxplot.Rd man/plotTopGenesPerSample.Rd man/plotUMAP.Rd man/plotVariableGenes.Rd man/plotVolcano.Rd man/progressLog.Rd man/raw.Rd man/raw_set.Rd man/regcounts.Rd man/regressConfoundingFactors.Rd man/rowInfo.Rd man/runCORE.Rd man/runDESeq.Rd man/runDESeq2.Rd man/runDiffExpression.Rd man/runPCA.Rd man/runTSNE.Rd man/runUMAP.Rd man/scranCellCycle.Rd man/scranNormalise.Rd man/sub-EMSet-ANY-ANY-ANY-method.Rd man/subset-EMSet-ANY-ANY-EMSet-method.Rd man/subsetCondition.Rd man/updateObject-EMSet-method.Rd man/useVariableGenes.Rd man/validateEMSet.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/dense_rle.cpp
src/sparse_rle.cpp
tests/testthat.R tests/testthat/test-methods.R tests/testthat/test-object.R tests/testthat/test-subsetters.R vignettes/ascend-installation.Rmd vignettes/ascend-tutorial.Rmd
workflow.png
IMB-Computational-Genomics-Lab/ascend documentation built on June 14, 2019, 12:01 p.m.