regcounts: regcounts
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
Description
Convenience method to access regressed counts from an EMSet.
Usage
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Arguments
x
EMSet
...
...
value
A matrix with confounding factors regressed out
Value
Regressed count matrix
value stored in regcounts slot of EMSet
Examples
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# Load em_set
em_set <- ascend::analyzed_set
# Regress out CDK4
reg_set <- regressConfoundingFactors(em_set, candidate.genes = "CDK4")
# Access regressed matrix
reg_counts <- regcounts(reg_set)
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
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Description Usage Arguments Value Examples
Description
Convenience method to access regressed counts from an EMSet.
Usage
1 2 3 4 5 6 7 8 9 |
Arguments
x |
EMSet |
... |
... |
value |
A matrix with confounding factors regressed out |
Value
Regressed count matrix
value stored in regcounts slot of EMSet
Examples
1 2 3 4 5 6 7 8 | # Load em_set
em_set <- ascend::analyzed_set
# Regress out CDK4
reg_set <- regressConfoundingFactors(em_set, candidate.genes = "CDK4")
# Access regressed matrix
reg_counts <- regcounts(reg_set)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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