plotNormQC: plotNormQC

In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression

Description

Generates a series of plots comparing an un-normalised and a normalised EMSet.

Usage

plotNormQC(object, gene_list = list())

Arguments

object	A normalised EMSet.
gene_list	OPTIONAL: A list of genes to plot expression levels for. If not defined, ascend will select GAPDH and MALAT1, or choose two genes at random.

Value

A list containing the following plots:

• Library size histograms.

• Scatter boxplots for selected genes.

• Scatter boxplots for each gene.

Examples

# Load normalised EMSet
EMSet <- ascend::analyzed_set

# Plot normalisation
norm_qc <- plotNormQC(EMSet, gene_list = c("GAPDH", "MALAT1"))

IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.