loadCellRanger: loadCellRanger
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
View source: R/ascend_cellranger.R
Description
Automatically loads and prepares data from a folder containing Cell Ranger
output. Filtered data should be used as raw data is too large for most
desktop systems.
Usage
1
Arguments
x
Path to Cell Ranger filtered output
(eg. outs/filtered_gene_bc_matrices_mex/GRCh38p7)
Value
An EMSet with Mt and Rb genes set as controls
Examples
1
2
3
4
5
6
## Not run:
# Output folder generated by Cell Ranger
cellranger_dir <- "CellRangerOutput/outs/filtered_gene_bc_matrices_mex/GRCh38p7"
em_set <- loadCellRanger(cellranger_dir)
## End(Not run)
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
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Description Usage Arguments Value Examples
View source: R/ascend_cellranger.R
Description
Automatically loads and prepares data from a folder containing Cell Ranger output. Filtered data should be used as raw data is too large for most desktop systems.
Usage
1 |
Arguments
x |
Path to Cell Ranger filtered output (eg. outs/filtered_gene_bc_matrices_mex/GRCh38p7) |
Value
An EMSet with Mt and Rb genes set as controls
Examples
1 2 3 4 5 6 | ## Not run:
# Output folder generated by Cell Ranger
cellranger_dir <- "CellRangerOutput/outs/filtered_gene_bc_matrices_mex/GRCh38p7"
em_set <- loadCellRanger(cellranger_dir)
## End(Not run)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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