func_DESeq: func_DESeq

In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression

Description

Function called by parallel version of runDESeq.

Usage

func_DESeq(x, expression_matrix = NULL, condition_list = NULL,
  condition.a = NULL, condition.b = NULL, fitType = NULL,
  method = NULL)

Arguments

x	List of genes
expression_matrix	Matrix of counts with a pseudocount added
condition_list	Vector of conditions linked to cells
condition.a	Condition A to test
condition.b	Condition B to test
fitType	DESeq argument - fitType to use
method	DESeq argument - method to use

Value

List of chunked results for DESeq

IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.