plotStability: plotStability
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
Description
Plots Stability, Consecutive RI and Rand Index. This can be used to determine
the optimal resolution of the clustering results.
Usage
1
plotStability(object)
Arguments
object
An EMSet object that has undergone clustering.
Value
A line graph generated by ggplot2's geom_line function
Examples
1
2
3
4
5
# Load example EMSet that has undergone processing
em_set <- ascend::analyzed_set
# Use function to plot stability scores
stability_plot <- plotStability(em_set)
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
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Description Usage Arguments Value Examples
Description
Plots Stability, Consecutive RI and Rand Index. This can be used to determine the optimal resolution of the clustering results.
Usage
1 | plotStability(object)
|
Arguments
object |
An |
Value
A line graph generated by ggplot2's geom_line function
Examples
1 2 3 4 5 | # Load example EMSet that has undergone processing
em_set <- ascend::analyzed_set
# Use function to plot stability scores
stability_plot <- plotStability(em_set)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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