useVariableGenes: useVariableGenes
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
Description
Reduces an EMSet to a range of the most variable genes as determined by
the values calculated by calculateCV.
Usage
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useVariableGenes(object, ngenes)
## S4 method for signature 'EMSet'
useVariableGenes(object, ngenes = 1500)
Arguments
object
EMSet
ngenes
Number of variable genes to use (Default: 1500 genes)
Value
EMSet reduced to specified number of variable genes.
Examples
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# Load example EMSet
em_set <- ascend::analyzed_set
# Calculate gene variance
em_set <- calculateCV(em_set)
# Use 1500 of the most variable genes
em_set <- useVariableGenes(em_set, ngenes = 1500)
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
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Description Usage Arguments Value Examples
Description
Reduces an EMSet to a range of the most variable genes as determined by
the values calculated by calculateCV.
Usage
1 2 3 4 | useVariableGenes(object, ngenes)
## S4 method for signature 'EMSet'
useVariableGenes(object, ngenes = 1500)
|
Arguments
object |
EMSet |
ngenes |
Number of variable genes to use (Default: 1500 genes) |
Value
EMSet reduced to specified number of variable genes.
Examples
1 2 3 4 5 6 7 8 | # Load example EMSet
em_set <- ascend::analyzed_set
# Calculate gene variance
em_set <- calculateCV(em_set)
# Use 1500 of the most variable genes
em_set <- useVariableGenes(em_set, ngenes = 1500)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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