deconvo_estimate: Calculation of stromal, immune, and ESTIMATE scores
In IOBR/IOBR: Immune Oncology Biological Research

deconvo_estimate

R Documentation

Calculation of stromal, immune, and ESTIMATE scores

Description

Calculation of stromal, immune, and ESTIMATE scores

Usage

deconvo_estimate(eset, project = NULL, platform = "affymetrix")

Arguments

`eset`	expression set with genes at row, sample ID at column
`project`	project name used to distinguish different data sets
`platform`	character string indicating platform type. Defaults to "affymetrix"

Author(s)

Dongqiang Zeng

Examples

# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
deconvo_estimate(eset)

IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.