deconvo_estimate | R Documentation |
Calculation of stromal, immune, and ESTIMATE scores
deconvo_estimate(eset, project = NULL, platform = "affymetrix")
eset |
expression set with genes at row, sample ID at column |
project |
project name used to distinguish different data sets |
platform |
character string indicating platform type. Defaults to "affymetrix" |
A data frame with the calculated stromal, immune, and ESTIMATE scores.
Dongqiang Zeng
# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
deconvo_estimate(eset)
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