deconvo_ips: Calculating immune phenotype score using IPS

View source: R/deconvo_tme.R

deconvo_ipsR Documentation

Calculating immune phenotype score using IPS

Description

Calculating immune phenotype score using IPS

Usage

deconvo_ips(eset, project = NULL, plot)

Arguments

eset

expression set with genes at row, sample ID at column

project

project name used to distinguish different data sets

Value

IPS data frame

Author(s)

Dongqiang Zeng

Examples

# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
ips_result<-deconvo_ips(eset = eset, project = "TCGA-STAD")


IOBR/IOBR documentation built on March 23, 2024, 9:37 a.m.