eset_distribution: Title eset_distribution

In IOBR/IOBR: Immune Oncology Biological Research

Title eset_distribution

Description

eset_distribution generates boxplots and density plots to analyze the distribution of expression values in an expression set (eset).

Usage

eset_distribution(eset, quantile = 3, log = TRUE, project = NULL)

Arguments

eset	Expression set (matrix or data frame) containing gene expression data.
quantile	Number of quantiles used for sampling columns in the eset matrix.
log	Logical value indicating whether to perform log2 transformation of the expression values.
project	Optional string specifying the name of the project. If not provided, a default name ('ESET') is used.

Value

This function does not return a value but saves boxplots and density plots as PNG files in the specified or default directory.

Examples

data("eset_stad",package = "IOBR")
eset <- anno_eset(eset = eset_stad, annotation = anno_rnaseq)
eset_distribution(eset)

IOBR/IOBR documentation built on July 16, 2025, 8:12 p.m.