deconvo_xcell: Decoding immune microenvironment using xCell
In IOBR/IOBR: Immune Oncology Biological Research

deconvo_xcell

R Documentation

Decoding immune microenvironment using xCell

Description

Decoding immune microenvironment using xCell

Usage

deconvo_xcell(eset, project = NULL, arrays = FALSE)

Arguments

`eset`	expression set with genes at row, sample ID at column
`project`	project name used to distinguish different data sets
`array`	transcrptomic data type

Value

xCell with immune cell fractions

Author(s)

Dongqiang Zeng

Examples

# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
xcell_result<-deconvo_xcell(eset = eset, project = "TCGA-STAD", arrays = FALSE)

IOBR/IOBR documentation built on Nov. 27, 2024, 6:44 p.m.