deconvo_xcell: Decoding immune microenvironment using xCell

View source: R/deconvo_tme.R

deconvo_xcellR Documentation

Decoding immune microenvironment using xCell

Description

Decoding immune microenvironment using xCell

Usage

deconvo_xcell(eset, project = NULL, arrays = FALSE)

Arguments

eset

expression set with genes at row, sample ID at column

project

project name used to distinguish different data sets

array

transcrptomic data type

Value

xCell with immune cell fractions

Author(s)

Dongqiang Zeng

Examples

# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
xcell_result<-deconvo_xcell(eset = eset, project = "TCGA-STAD", arrays = FALSE)


IOBR/IOBR documentation built on Nov. 13, 2024, 5:22 a.m.