deconvo_xcell: Decoding immune microenvironment using xCell

In IOBR/IOBR: Immune Oncology Biological Research

Decoding immune microenvironment using xCell

Description

Decoding immune microenvironment using xCell

Usage

deconvo_xcell(eset, project = NULL, arrays = FALSE)

Arguments

eset	expression set with genes at row, sample ID at column
project	project name used to distinguish different data sets
array	transcrptomic data type

Value

xCell with immune cell fractions

Author(s)

Dongqiang Zeng

Examples

# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
xcell_result<-deconvo_xcell(eset = eset, project = "TCGA-STAD", arrays = FALSE)

IOBR/IOBR documentation built on April 4, 2024, 1:07 a.m.