deconvo_mcpcounter: Estimating immune microenvironment using MCP-counter
In IOBR/IOBR: Immune Oncology Biological Research
deconvo_mcpcounter R Documentation
Estimating immune microenvironment using MCP-counter
Description
Estimating immune microenvironment using MCP-counter
Usage
deconvo_mcpcounter(eset, project = NULL)
Arguments
eset
expression set with genes at row, sample ID at column
project
project name used to distinguish different data sets
Value
MCPcounter with immune cell fractions
Author(s)
Dongqiang Zeng
Examples
# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
mcp_result<-deconvo_mcpcounter(eset = eset, project = "TCGA-STAD")
IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.
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| deconvo_mcpcounter | R Documentation |
Estimating immune microenvironment using MCP-counter
Description
Estimating immune microenvironment using MCP-counter
Usage
deconvo_mcpcounter(eset, project = NULL)
Arguments
eset |
expression set with genes at row, sample ID at column |
project |
project name used to distinguish different data sets |
Value
MCPcounter with immune cell fractions
Author(s)
Dongqiang Zeng
Examples
# Loading TCGA-STAD expresion data(raw count matrix)
data(eset_stad, package = "IOBR")
eset <- count2tpm(countMat = eset_stad, source = "local", idType = "ensembl")
mcp_result<-deconvo_mcpcounter(eset = eset, project = "TCGA-STAD")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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