blueEyesExtended: Function to screen for testing eye color

In IngaPa/myDNA: myDNA: R package to analyze personal genotypes

Description

Function to screen for testing eye color

Usage

blueEyesExtended(myDNA)

Arguments

myDNA

(character) path to the genotype file

Details

Source 2: SNPedia for rs12913832 resuts source 2: rs12913832 is also part of a haplotype spanning 166kB on chromosome 15, defined by 13 SNPs listed below, that is found in 97 The "h-1" haplotype found in homozygous state in 97 with blue eye color is composed as follows [PMID 18172690]:

rs4778241(C) rs1129038(A) rs12593929(A) rs12913832(G) OCA2/HERC2 has a score of 51.5 and an estimated allelic OR of 8.43 rs7183877(C) rs3935591(G) rs7170852(A) rs2238289(T) rs3940272(C) rs8028689(T) rs2240203(A) rs11631797(G) rs916977(G) ADDED from SNPedia: rs1667394 increases susceptibility to Blond rather than brown hair 4.94 times for carriers of the A allele

!!!! myAllele column reports whether risk allele was identified in my genome

Author(s)

Inga Patarcic

Examples

## Not run: 
# example myHeritage
 library(myDNA)
 library(dplyr)
 library(stringr)
  Genome="/data/akalin/Projects/AAkalin_myDNA/Data/MyHeritage/MyHeritage_raw_dna_dataInga/MyHeritage_raw_dna_data.csv"
   myDNA <- importDNA(myGenotypes = Genome,type = "myHeritage" )
 blueEyesExtended(myDNA)

## End(Not run)

IngaPa/myDNA documentation built on Oct. 30, 2019, 7:22 p.m.